| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
Click here to switch to the map view.
The map label for this gene is 187929475
Identifier: 187929475
GI number: 187929475
Start: 2490377
End: 2490976
Strand: Reverse
Name: 187929475
Synonym: Rpic_2396
Alternate gene names: NA
Gene position: 2490976-2490377 (Counterclockwise)
Preceding gene: 187929476
Following gene: 187929466
Centisome position: 63.18
GC content: 63.5
Gene sequence:
>600_bases GTGACGACCACCACGCCGCCCATCAGCCGGTTCCCCGTTCCTTCACTGGCCGACATTCCCGAAGACATCCGCGCGCGCAT CCTGGAGGTGCAGGAGAAGAGCGGCTTTGTGCCGAACGTCTTCCTTGCGCTGTCGCATCGGCCCGACGAGTGCCGTGCCT TCTTCGCGTACCACGATGCGCTGATGCTGCGGGAAGGCAGCAGCCTCACCAAGGGCGAGCGCGAGATGATCGTCGTCGCC ACCTCCGCTGCCAACCAGTGCCTGTATTGCGTGGTCGCGCACGGCGCCATCCTGCGCATTTACGAGAAGAATCCGCTGGT GGCCGACCAGGTGGCCGTCAATTACCGCAAGGCCGACATCACGCCGCGCCAGCGCGCCATGCTCGACTTTGCGATGAAGG TTTGCACCGCATCGCACACCGTCAACGACGCCGACTATGAAGCGCTGCGCGCGCACGGCTTCGATGATGAGGACATCTGG GACATCGCCGGCATCACCGCCTTCTTCGGCCTGTCGAATCGCATGGCGAATGTGATTTCGATGCGGCCGAACGAGGAGTT CTTCCTGCTAGGCCGTCTGCCGCGCGAGAAGAAGGCGTAG
Upstream 100 bases:
>100_bases CGATGGGTTGTATGCTGGACTCCATCGCATCCAGTTCGCTACCCAGTAAGCCCTTCCTCTCGGGCGGCGTGCTCAGGATG CTCACATCAAAGGAGACATC
Downstream 100 bases:
>100_bases CCCAGCGCCGCTGGCCGGGTGTGGCGCTACATCAAGATGATGTCGTACTGCTCCTGGCTCGCCGCCGACGATTCCACCTG CAACGAAATCGGCTTGCCGA
Product: peroxidase-like protein
Products: NA
Alternate protein names: Alkylhydroperoxidase AhpD Family Core Domain Protein; Peroxidase-Like Protein; Alkylhydroperoxidase AhpD Core; Alkylhydroperoxidase; Peroxidase-Like; 4-Carboxymuconolactone Decarboxylase; Alkylhydroperoxidase AhpD Domain Protein; Peroxidase; Peroxidase-Related Subfamily; Carboxymuconolactone Decarboxylase; Peroxidase Family Protein; Carboxymuconolactone Decarboxylase Family; Carboxymuconolactone Decarboxylase Family Protein; Peroxidase Related Protein; Alkylhydroperoxidase Ahpd Family Core Domain; Alkylhydroperoxidase AhpD; Macrophage Infectivity Potentiator-Related Protein; Peroxidase-Related Protein
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MTTTTPPISRFPVPSLADIPEDIRARILEVQEKSGFVPNVFLALSHRPDECRAFFAYHDALMLREGSSLTKGEREMIVVA TSAANQCLYCVVAHGAILRIYEKNPLVADQVAVNYRKADITPRQRAMLDFAMKVCTASHTVNDADYEALRAHGFDDEDIW DIAGITAFFGLSNRMANVISMRPNEEFFLLGRLPREKKA
Sequences:
>Translated_199_residues MTTTTPPISRFPVPSLADIPEDIRARILEVQEKSGFVPNVFLALSHRPDECRAFFAYHDALMLREGSSLTKGEREMIVVA TSAANQCLYCVVAHGAILRIYEKNPLVADQVAVNYRKADITPRQRAMLDFAMKVCTASHTVNDADYEALRAHGFDDEDIW DIAGITAFFGLSNRMANVISMRPNEEFFLLGRLPREKKA >Mature_198_residues TTTTPPISRFPVPSLADIPEDIRARILEVQEKSGFVPNVFLALSHRPDECRAFFAYHDALMLREGSSLTKGEREMIVVAT SAANQCLYCVVAHGAILRIYEKNPLVADQVAVNYRKADITPRQRAMLDFAMKVCTASHTVNDADYEALRAHGFDDEDIWD IAGITAFFGLSNRMANVISMRPNEEFFLLGRLPREKKA
Specific function: Unknown
COG id: COG2128
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22321; Mature: 22190
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTTPPISRFPVPSLADIPEDIRARILEVQEKSGFVPNVFLALSHRPDECRAFFAYHDA CCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH LMLREGSSLTKGEREMIVVATSAANQCLYCVVAHGAILRIYEKNPLVADQVAVNYRKADI HEEECCCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEEECCCCCCHHHHHEEEEECCC TPRQRAMLDFAMKVCTASHTVNDADYEALRAHGFDDEDIWDIAGITAFFGLSNRMANVIS CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC MRPNEEFFLLGRLPREKKA CCCCCCEEEEECCCCCCCC >Mature Secondary Structure TTTTPPISRFPVPSLADIPEDIRARILEVQEKSGFVPNVFLALSHRPDECRAFFAYHDA CCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH LMLREGSSLTKGEREMIVVATSAANQCLYCVVAHGAILRIYEKNPLVADQVAVNYRKADI HEEECCCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEEECCCCCCHHHHHEEEEECCC TPRQRAMLDFAMKVCTASHTVNDADYEALRAHGFDDEDIWDIAGITAFFGLSNRMANVIS CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC MRPNEEFFLLGRLPREKKA CCCCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA