Click here to switch to the map view.

The map label for this gene is ycbK [H]

Identifier: 187929463

GI number: 187929463

Start: 2477976

End: 2478893

Strand: Reverse

Name: ycbK [H]

Synonym: Rpic_2384

Alternate gene names: 187929463

Gene position: 2478893-2477976 (Counterclockwise)

Preceding gene: 187929466

Following gene: 187929462

Centisome position: 62.88

GC content: 64.71

Gene sequence:

>918_bases
GTGACCACAGCGTCTTCTGCGTCTACCACGCCCGTAAGAACTACCGACACCGGCGGTCTGCTGCTTGCGTCCGCGGGCGC
CGTGCTGTTCTCCGCCAAGGCCATCGTCGCCAAGCTGATGTACCGCTATCAGGTGGATGCCGTCATGGTCATCACCCTGC
GCATGCTCCTGGCCGCACCGCTGTTCATGGCGATGGGGTGGTGGCAGTCGCGCCGTGCGCAGCCCCTGGCCGTGGCAGAC
CGCTGGCGCATCGTCGGCTTGGGCCTCATCGGCTATTACCTCTCCAGCTTTCTCGACTTCCTCGGCCTGCAATACATCAC
GGCAGGGCTGGAGCGGCTGATTCTGTTTCTGACACCGTCGTTCGTGCTGCTGATTACGTCGACGGTATTCAAGCGGCGCA
TTACAGGCTTGCAGTGGGTGTCGCTGGCGCTGGCCTATGCCGGCATCGTGCTGGTGTTCGCGCACGACCTAAACCTGGGC
GGTAACAACGTCTGGCTGGGCGGCGGATTGGTGCTCGCCAGCGCCGTCAGCTACGGTATCTATCTGCTGGCCAGCGGTGA
GCTGGTCAAACGCGTGGGATCGATGCGGCTCGTCGCCTATGCGATGTGCGTGTCGACCGCGGCCTGTATCGTCCAGTTTC
TGGTACTGCGGCCGGTGTCGGCGCTGGTGTTGCCTTGGCAGGTGTACGGGCTGTCGACCATCAACTCGGTGTTCTGTACG
GTGGCGCCGGTCACGATGACGATGATGGCGGTGGCGCGCGTGGGTGCGCCCGTGGCGTCGCAGGCAGGCATGATCGGGCC
GGTGTCGACACTGCTGCTGGGCTGGTGGCTGCTGGGCGAGCCGATCACGATTTGGCAGATTGCCGGCAGCGCGCTGGTGC
TTGCCGGTATGGCGCTGCTGTCACGCCGTCGCGGCTGA

Upstream 100 bases:

>100_bases
TGTGCCAAGTGCAGCGCACCCCGCGCCGGAACGTTTTGTTGAATTCCAATACAATCGACGACGCTCTCCAACACCGCCCG
CATCTCTCTCTCGCCCCGTT

Downstream 100 bases:

>100_bases
CGGGCGGCCAATCCAAATAGCAATCACAAGGAGTCAGACAAGATGGACTTGGGGCTGAAAGGCAAGCGTGCGCTGGTGTG
TGGCGCAAGCAAGGGATTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MTTASSASTTPVRTTDTGGLLLASAGAVLFSAKAIVAKLMYRYQVDAVMVITLRMLLAAPLFMAMGWWQSRRAQPLAVAD
RWRIVGLGLIGYYLSSFLDFLGLQYITAGLERLILFLTPSFVLLITSTVFKRRITGLQWVSLALAYAGIVLVFAHDLNLG
GNNVWLGGGLVLASAVSYGIYLLASGELVKRVGSMRLVAYAMCVSTAACIVQFLVLRPVSALVLPWQVYGLSTINSVFCT
VAPVTMTMMAVARVGAPVASQAGMIGPVSTLLLGWWLLGEPITIWQIAGSALVLAGMALLSRRRG

Sequences:

>Translated_305_residues
MTTASSASTTPVRTTDTGGLLLASAGAVLFSAKAIVAKLMYRYQVDAVMVITLRMLLAAPLFMAMGWWQSRRAQPLAVAD
RWRIVGLGLIGYYLSSFLDFLGLQYITAGLERLILFLTPSFVLLITSTVFKRRITGLQWVSLALAYAGIVLVFAHDLNLG
GNNVWLGGGLVLASAVSYGIYLLASGELVKRVGSMRLVAYAMCVSTAACIVQFLVLRPVSALVLPWQVYGLSTINSVFCT
VAPVTMTMMAVARVGAPVASQAGMIGPVSTLLLGWWLLGEPITIWQIAGSALVLAGMALLSRRRG
>Mature_304_residues
TTASSASTTPVRTTDTGGLLLASAGAVLFSAKAIVAKLMYRYQVDAVMVITLRMLLAAPLFMAMGWWQSRRAQPLAVADR
WRIVGLGLIGYYLSSFLDFLGLQYITAGLERLILFLTPSFVLLITSTVFKRRITGLQWVSLALAYAGIVLVFAHDLNLGG
NNVWLGGGLVLASAVSYGIYLLASGELVKRVGSMRLVAYAMCVSTAACIVQFLVLRPVSALVLPWQVYGLSTINSVFCTV
APVTMTMMAVARVGAPVASQAGMIGPVSTLLLGWWLLGEPITIWQIAGSALVLAGMALLSRRRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32612; Mature: 32480

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTASSASTTPVRTTDTGGLLLASAGAVLFSAKAIVAKLMYRYQVDAVMVITLRMLLAAP
CCCCCCCCCCCCEECCCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFMAMGWWQSRRAQPLAVADRWRIVGLGLIGYYLSSFLDFLGLQYITAGLERLILFLTPS
HHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVLLITSTVFKRRITGLQWVSLALAYAGIVLVFAHDLNLGGNNVWLGGGLVLASAVSYGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCE
YLLASGELVKRVGSMRLVAYAMCVSTAACIVQFLVLRPVSALVLPWQVYGLSTINSVFCT
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VAPVTMTMMAVARVGAPVASQAGMIGPVSTLLLGWWLLGEPITIWQIAGSALVLAGMALL
HHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH
SRRRG
HHCCC
>Mature Secondary Structure 
TTASSASTTPVRTTDTGGLLLASAGAVLFSAKAIVAKLMYRYQVDAVMVITLRMLLAAP
CCCCCCCCCCCEECCCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFMAMGWWQSRRAQPLAVADRWRIVGLGLIGYYLSSFLDFLGLQYITAGLERLILFLTPS
HHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVLLITSTVFKRRITGLQWVSLALAYAGIVLVFAHDLNLGGNNVWLGGGLVLASAVSYGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCE
YLLASGELVKRVGSMRLVAYAMCVSTAACIVQFLVLRPVSALVLPWQVYGLSTINSVFCT
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VAPVTMTMMAVARVGAPVASQAGMIGPVSTLLLGWWLLGEPITIWQIAGSALVLAGMALL
HHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH
SRRRG
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]