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The map label for this gene is ygaU [H]

Identifier: 187929346

GI number: 187929346

Start: 2387830

End: 2388315

Strand: Reverse

Name: ygaU [H]

Synonym: Rpic_2267

Alternate gene names: 187929346

Gene position: 2388315-2387830 (Counterclockwise)

Preceding gene: 187929348

Following gene: 187929343

Centisome position: 60.58

GC content: 61.11

Gene sequence:

>486_bases
ATGGGTTTTTTTGACTTCATCAAAGAGGCTGGCGAGAAGCTCTTCCACGGCAGCGCTGCAGCCGCGCCGGCCGATGCGTC
GGCGGATGCCGATGCCGCCAAGGCAGCCGACGATGCAAAGGGCCAAGCCATCCAGGACTACATCGCGCAGCAGGGCCTGA
GCGCCACAGCGCTGTCGGTGCAGGTGGAAGGCGATGCTGCCAAGGTGTTTGGCGTAGCGCCGGATCAAGCCACGCGCGAG
AAAATCATCCTGTGCTGCGGCAACGTCGAGGGGATCAAGTCGGTGGATGACCAGATGTCGGTCAACACCGAGTCGGAAGA
ATCGCAATGGCACACCGTGGAGCGCGGCGATACGCTTTCGGCCATCGCCAAGAAGTTCTACGGCGATGCGAACAAGTACC
CGGCCATCTTCGAAGCCAACAAGCCGATGCTGTCGAATCCGGACAAGATCTATCCGGGGCAGAAGCTGCGCATTCCGGCG
GCTTGA

Upstream 100 bases:

>100_bases
GACACCGTTGGCAAGCGGCTACACTGCCGCGACAGGCGCGCTCCGCTGTGGCCCGCCTCTCTGCGTTCCCGTTCCCCGTT
GTGTACTTATGGAGGTCGTT

Downstream 100 bases:

>100_bases
TTTGGCTTGCTTTGTTTCGGAGGCGCAAAGCAAAAAGCCCAGTCGATGAAGACTGGGCTTTTTTTATTCTGGTGCCGCTG
ACCGGAATCGAACTGGTGAC

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MGFFDFIKEAGEKLFHGSAAAAPADASADADAAKAADDAKGQAIQDYIAQQGLSATALSVQVEGDAAKVFGVAPDQATRE
KIILCCGNVEGIKSVDDQMSVNTESEESQWHTVERGDTLSAIAKKFYGDANKYPAIFEANKPMLSNPDKIYPGQKLRIPA
A

Sequences:

>Translated_161_residues
MGFFDFIKEAGEKLFHGSAAAAPADASADADAAKAADDAKGQAIQDYIAQQGLSATALSVQVEGDAAKVFGVAPDQATRE
KIILCCGNVEGIKSVDDQMSVNTESEESQWHTVERGDTLSAIAKKFYGDANKYPAIFEANKPMLSNPDKIYPGQKLRIPA
A
>Mature_160_residues
GFFDFIKEAGEKLFHGSAAAAPADASADADAAKAADDAKGQAIQDYIAQQGLSATALSVQVEGDAAKVFGVAPDQATREK
IILCCGNVEGIKSVDDQMSVNTESEESQWHTVERGDTLSAIAKKFYGDANKYPAIFEANKPMLSNPDKIYPGQKLRIPAA

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=160, Percent_Identity=45, Blast_Score=137, Evalue=3e-34,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 17041; Mature: 16910

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFFDFIKEAGEKLFHGSAAAAPADASADADAAKAADDAKGQAIQDYIAQQGLSATALSV
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCEEEEEE
QVEGDAAKVFGVAPDQATREKIILCCGNVEGIKSVDDQMSVNTESEESQWHTVERGDTLS
EECCCCEEEEECCCCCCCCCEEEEEECCCCCCHHCCHHHCCCCCCCCCHHEECCCCCHHH
AIAKKFYGDANKYPAIFEANKPMLSNPDKIYPGQKLRIPAA
HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCC
>Mature Secondary Structure 
GFFDFIKEAGEKLFHGSAAAAPADASADADAAKAADDAKGQAIQDYIAQQGLSATALSV
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCEEEEEE
QVEGDAAKVFGVAPDQATREKIILCCGNVEGIKSVDDQMSVNTESEESQWHTVERGDTLS
EECCCCEEEEECCCCCCCCCEEEEEECCCCCCHHCCHHHCCCCCCCCCHHEECCCCCHHH
AIAKKFYGDANKYPAIFEANKPMLSNPDKIYPGQKLRIPAA
HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]