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The map label for this gene is omp32 [H]

Identifier: 187929341

GI number: 187929341

Start: 2379236

End: 2380306

Strand: Direct

Name: omp32 [H]

Synonym: Rpic_2262

Alternate gene names: 187929341

Gene position: 2379236-2380306 (Clockwise)

Preceding gene: 187929340

Following gene: 187929344

Centisome position: 60.35

GC content: 63.87

Gene sequence:

>1071_bases
ATGCAGTCGAAATTCAAGCGTGGCATGGCCGCGCTGGCAGTGGCATCGGCACTGGGGGCAGCAAGTGCCGGTGCGCAGGC
GCAGTCGTCCGTCACGCTGTACGGCCAGGTGGATGCCTGGGCGGGCGCCACCAAGACCCTGGGCGCATCGGATCGCGCCT
GGGGCGTCAACTCGGGCGGTATGTCGACCTCGTACTGGGGCATGAAGGGCAGCGAAGATCTGGGCAATGGCTTGAAGGCG
ATCTTCACGCTGGAAGCGTTCTTCCGCCCGGACACCGGCAAGTACGGGCGCTTTGACGGCGATACGTTCTTCGCCCGCAA
CTCGTTCGTCGGCCTGCAATCGAGCACGTGGGGTTCGATCAAGCTCGGCCGCCTGACGCCGCCGTATTTCGTATCGACGA
TCCTGTTCAACCCGTTCATCGATTCGTACACGTTCTCGCCGATGGTGTTCCACACGTACCTCGGCAACGGCCTGCGCGGC
CCCGGCGGTATCTCGGGTCTGGTGGGCGATTCGGGCTGGAACAACGCGATCATGTATTCGACGCCGGACTTCAACGGTCT
GACCGCCAACTTCATCTACGGCGCGGGCGAGCAAGCCGGCCACAACGGCCAGAACAAGTGGGGCGGCAACTTCCTGTACT
TCCATGGCAACTTCGCAGCCACGGCGGCTTTCCAGCAGGTGCGCTTCGACTCCGCCCCGGGTGACCTGAACGCACTGGTG
GCAGGCTTCTCGCGTCAGACGGCCGCGCAGCTCGGTGCCACGTACGACTTTGGCGTGGCCAAGGTCTACGGCCAGTACCA
GTACATCAAGAACGCCATCAACTCGGGGGACGCGAAGAGCAACGGCGGCCAACTGGGCATGTCGGTGCCGGTGGGCCCGG
GCAGCATCCTGGCGTCGTACGCGTACACCAAAACTTCGGGTGCGGCTGACGTGAAGCGCAACACGTGGGCGGTCGGTTAC
GACTATTCGCTGTCCAAGCGCACTGACGTGTACGCCGCGTACATGCGCGACAAGGTGACGAGCCTCAGCTCGGCAGACAC
CTTCGGCGTGGGCATCCGCGCGAAGTTCTAA

Upstream 100 bases:

>100_bases
ATGGGACACCGTCCGGCATGGAGCCTGACCAGCCGGCCTGTGACTGCATCAAAGAATGCAGCGCAACCTGCAGTGACTTT
CAACAACAAAGGAGGTAGCA

Downstream 100 bases:

>100_bases
GCAGTCGGCAGCAAAGAAAAACGGCGCCTGGACTTTCCCCAGGCGCCGTTTTCTTTTGGGCCGCCAACCTTCAGCGGCCC
AACAGTTGGATCAACCAATC

Product: porin

Products: NA

Alternate protein names: OMP32 [H]

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MQSKFKRGMAALAVASALGAASAGAQAQSSVTLYGQVDAWAGATKTLGASDRAWGVNSGGMSTSYWGMKGSEDLGNGLKA
IFTLEAFFRPDTGKYGRFDGDTFFARNSFVGLQSSTWGSIKLGRLTPPYFVSTILFNPFIDSYTFSPMVFHTYLGNGLRG
PGGISGLVGDSGWNNAIMYSTPDFNGLTANFIYGAGEQAGHNGQNKWGGNFLYFHGNFAATAAFQQVRFDSAPGDLNALV
AGFSRQTAAQLGATYDFGVAKVYGQYQYIKNAINSGDAKSNGGQLGMSVPVGPGSILASYAYTKTSGAADVKRNTWAVGY
DYSLSKRTDVYAAYMRDKVTSLSSADTFGVGIRAKF

Sequences:

>Translated_356_residues
MQSKFKRGMAALAVASALGAASAGAQAQSSVTLYGQVDAWAGATKTLGASDRAWGVNSGGMSTSYWGMKGSEDLGNGLKA
IFTLEAFFRPDTGKYGRFDGDTFFARNSFVGLQSSTWGSIKLGRLTPPYFVSTILFNPFIDSYTFSPMVFHTYLGNGLRG
PGGISGLVGDSGWNNAIMYSTPDFNGLTANFIYGAGEQAGHNGQNKWGGNFLYFHGNFAATAAFQQVRFDSAPGDLNALV
AGFSRQTAAQLGATYDFGVAKVYGQYQYIKNAINSGDAKSNGGQLGMSVPVGPGSILASYAYTKTSGAADVKRNTWAVGY
DYSLSKRTDVYAAYMRDKVTSLSSADTFGVGIRAKF
>Mature_356_residues
MQSKFKRGMAALAVASALGAASAGAQAQSSVTLYGQVDAWAGATKTLGASDRAWGVNSGGMSTSYWGMKGSEDLGNGLKA
IFTLEAFFRPDTGKYGRFDGDTFFARNSFVGLQSSTWGSIKLGRLTPPYFVSTILFNPFIDSYTFSPMVFHTYLGNGLRG
PGGISGLVGDSGWNNAIMYSTPDFNGLTANFIYGAGEQAGHNGQNKWGGNFLYFHGNFAATAAFQQVRFDSAPGDLNALV
AGFSRQTAAQLGATYDFGVAKVYGQYQYIKNAINSGDAKSNGGQLGMSVPVGPGSILASYAYTKTSGAADVKRNTWAVGY
DYSLSKRTDVYAAYMRDKVTSLSSADTFGVGIRAKF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 37684; Mature: 37684

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSKFKRGMAALAVASALGAASAGAQAQSSVTLYGQVDAWAGATKTLGASDRAWGVNSGG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
MSTSYWGMKGSEDLGNGLKAIFTLEAFFRPDTGKYGRFDGDTFFARNSFVGLQSSTWGSI
CCCEECCCCCCHHHHCHHEEEEEEEHHCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCE
KLGRLTPPYFVSTILFNPFIDSYTFSPMVFHTYLGNGLRGPGGISGLVGDSGWNNAIMYS
EECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEE
TPDFNGLTANFIYGAGEQAGHNGQNKWGGNFLYFHGNFAATAAFQQVRFDSAPGDLNALV
CCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHH
AGFSRQTAAQLGATYDFGVAKVYGQYQYIKNAINSGDAKSNGGQLGMSVPVGPGSILASY
HCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHH
AYTKTSGAADVKRNTWAVGYDYSLSKRTDVYAAYMRDKVTSLSSADTFGVGIRAKF
HEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC
>Mature Secondary Structure
MQSKFKRGMAALAVASALGAASAGAQAQSSVTLYGQVDAWAGATKTLGASDRAWGVNSGG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
MSTSYWGMKGSEDLGNGLKAIFTLEAFFRPDTGKYGRFDGDTFFARNSFVGLQSSTWGSI
CCCEECCCCCCHHHHCHHEEEEEEEHHCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCE
KLGRLTPPYFVSTILFNPFIDSYTFSPMVFHTYLGNGLRGPGGISGLVGDSGWNNAIMYS
EECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEE
TPDFNGLTANFIYGAGEQAGHNGQNKWGGNFLYFHGNFAATAAFQQVRFDSAPGDLNALV
CCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHH
AGFSRQTAAQLGATYDFGVAKVYGQYQYIKNAINSGDAKSNGGQLGMSVPVGPGSILASY
HCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHH
AYTKTSGAADVKRNTWAVGYDYSLSKRTDVYAAYMRDKVTSLSSADTFGVGIRAKF
HEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1848840 [H]