| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is ybbP [H]
Identifier: 187929321
GI number: 187929321
Start: 2350107
End: 2352641
Strand: Reverse
Name: ybbP [H]
Synonym: Rpic_2242
Alternate gene names: 187929321
Gene position: 2352641-2350107 (Counterclockwise)
Preceding gene: 187929322
Following gene: 187929320
Centisome position: 59.67
GC content: 66.67
Gene sequence:
>2535_bases ATGTCACGTTTCTCCGTCTGGACCCAAGCCGTGCGCATGCTGCGCCGCGACTGGCGCGCCGGTGAACTGAACCTTCTGCT CGTCGCCCTGGTGCTGGCTGTGGCCGCGCTGGCGTCCGTCAGTTTCCTGGCCGACCGCATGCATGCCGGCCTGGAGCGTG ATGCGCGTCAGCTGATCGGCGCGGATGTGCTTGTCGTGTCCGACCAGCCGCTGCCGCCCGACATCGAGGCGCATGCGCAT GCGAGCGGCCTGCGGGTCACGCATACCGCCACCTTCCCCAGCATGGCGAGCACGTTGACCAGGGGCGCATCGGGCGAGCC CGCTTCGCAACTCGCTGCCATCAAGGCCGTCGACATGGGCTACCCGCTGCGCGGCACCCTCAAGGTGGGCGATGACGGGC GAGATACCGTGGGCGCGCCAATCCAGGGCATTCCCGCCGCAGGCACGGTGTGGGTGGACGCGCCGCTGCTAGAAGCGCTC GGCATTCGCGTGGGCGATGCGATACGTCTCGGCACGCGCACCTTCAAGATCGCGCATGTCATTACCCAGGAACTCGATCG CGGCGCGGGCTTCATGAATTTCGCGCCTCGGGTGATGCTGCCGATGTCGGACCTCGGTTCGACGGGCCTCGTCACCTACG GCAGCCGTGTCACGTATCGCCTGCTGGTGGCGGGTCCGGATGCCGCTGCCGGCACGTTCCACACCTGGGCCGAGAACGAA GCGAAGACGCGCCAGTTGCGTGGCGTGCGCGTTGAATCGTTGCAGAACGGCCAGCCGCAGATGCGCGAAACGCTGGACCG CGCCGAGCGCTTCCTCTCTCTCGTCGCCTTGCTGGCGGCCATGATTGCCGCAGTGGCGATTACGATGGCCGCGCGCCGCT ACACCGCGCGCCATACCGATGCGGTGGCCGTCATCAAATGCCTTGGACTCAAGCAACGGCAGATTCTCGGCACGTTCGCA CTGGAGTTCTTGCTGATCGGCGTGATGGGTTCGGCGGTGGGCGTGGCGCTGGGTTATGGCGCGCACTGGTTATTACTGGC GTCGCTCGGCGACCTGGTCACGGTGCCATTGCCCGCGCCATCCGCCTGGCCTGCGATCGTGGGCGTGACGGCGGGGCTGG TGCTGCTCATCGGCTTTGCGGTGCCGCCGTTGCTGGGCCTTGTGCGCGTGGCGCCGCTGCGCGTGCTCCGGCGCGATGTG GCGGAGCGCGCGGTTGCCGCATGGATCGGCTATGCGCTGGGTGCGGCGGCGTTCTTTGCGCTGCTGGTCGTGTCTGCGCG CGACGTGAAGCTTGGCGCGCTGACCGCTGCCGGGTTTGCCGGCGCCATCGTCGTCTTTGCGCTGCTGGCTGCAGGCGGGT TGCGCGCGCTGGCGGTGTCTTTGGGGCGTGGTCGAGCGCTCAGTGTGGGTTGGCGCTTTGCGCTCGCCGTGCTGGAGCGC CGTCGTGGCGTGAGCGTGCTGCAGACCGTGGCACTTGCGGTCGGTTTGATGGCGCTGCTATTGCTTGCCATGACGCGCAA TGATCTGATCCGCTCGTGGCACAACGCCACCCCGGCCGATGCGCCCAACCGGTTCATCATCAATATCCAGCCCGATCAGA TGCAGGCGGTGGCCCAGGCCCTCGCCCAAGCCGGCGTGGCGGACCCAACGCTCTACCCGATGGTGCGCGGGCGCCTGACG CAGGTGAATGGTCAGGTGATCGACCGCCAGACCTATGCCGAATCGCGCGCCCGCAATTTGGTCGAACGCGAATTCAACCT GTCGTACGCGACCACGCAGCCGCCTGAAAATCGCATCGTTTCCGGCCAATGGTTCAGTGGACAAAAGCCCGAGGCCTCGG TGGAAGAGGGCATTGCCAAGACGCTCAATCTCCATCTGGGTGACGTGCTGCGCTTCGACGTCGCCGGGCAGACCGTGGAT GCGCCCATCACGTCATTGCGCAAGCTCGACTGGAGTTCGATGCGCGTGAATTTCTTCGTGATCCTGCCGCCCGTGGCGCT GCACGATATGCCGCAGACGTACGTGACCGCGTTCCGCATTCCCGCCGGGCAGGCCGATCTGCCGGCAAAGCTTGTGCGCG AGTTTCCGAACCTCACGGTGGTCGATACCGAACTGATCCTGCAGCAGGTGCAGGGCGTGCTGGACCAGGTGACGGCGGCG GTGGAATTCCTCTTCGTCTTTACGCTGGCGGCGGGTGTGCTCGTGTTGTATGCAGCGCTCTCCGGCTCGCGCGACGAGCG CTTGCGCGATGCCGGCGTGCTGCGCGCGCTGGGTGCGGGCTCCAGCGTGGTGCGGCAGACGCAGTACGCAGAAGTGCTGA TCGTTGGCGGCCTCGCTGGGCTGATGGCCGGCGTGGGCGCGATCGCCATCGGCTGGGTGCTGTCGGCGTATGTGTTCGAT TTTCCGTATCGTTTCAACCCGGCAATCCTGCCGGTGGGCATCGTGAGCGGCATGGCGTGCGCCTTTGTTGGCGGCTGGTT GGGCTTGCGCGACGTGCTGCGTCGCCCGGCCATGGCAACGCTTCGTGACGCGTGA
Upstream 100 bases:
>100_bases CGCTGCCCTGGCACGCTGACGAGGCCCGCGCGCTCGCCCGCTGAAGTCGTGCGAACATGGCGGGGTTTGCGCCATCGGGC GCCTCGTCCATGTTCTGCCC
Downstream 100 bases:
>100_bases CGACGCCTGGATTTTTCTTGATGTGACTGACGCTGTATGACTGACGCAACTTCCGGCCAGGAATCCCTGGCGTTCGACCT CATTGGCGGCGAAGCGCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 844; Mature: 843
Protein sequence:
>844_residues MSRFSVWTQAVRMLRRDWRAGELNLLLVALVLAVAALASVSFLADRMHAGLERDARQLIGADVLVVSDQPLPPDIEAHAH ASGLRVTHTATFPSMASTLTRGASGEPASQLAAIKAVDMGYPLRGTLKVGDDGRDTVGAPIQGIPAAGTVWVDAPLLEAL GIRVGDAIRLGTRTFKIAHVITQELDRGAGFMNFAPRVMLPMSDLGSTGLVTYGSRVTYRLLVAGPDAAAGTFHTWAENE AKTRQLRGVRVESLQNGQPQMRETLDRAERFLSLVALLAAMIAAVAITMAARRYTARHTDAVAVIKCLGLKQRQILGTFA LEFLLIGVMGSAVGVALGYGAHWLLLASLGDLVTVPLPAPSAWPAIVGVTAGLVLLIGFAVPPLLGLVRVAPLRVLRRDV AERAVAAWIGYALGAAAFFALLVVSARDVKLGALTAAGFAGAIVVFALLAAGGLRALAVSLGRGRALSVGWRFALAVLER RRGVSVLQTVALAVGLMALLLLAMTRNDLIRSWHNATPADAPNRFIINIQPDQMQAVAQALAQAGVADPTLYPMVRGRLT QVNGQVIDRQTYAESRARNLVEREFNLSYATTQPPENRIVSGQWFSGQKPEASVEEGIAKTLNLHLGDVLRFDVAGQTVD APITSLRKLDWSSMRVNFFVILPPVALHDMPQTYVTAFRIPAGQADLPAKLVREFPNLTVVDTELILQQVQGVLDQVTAA VEFLFVFTLAAGVLVLYAALSGSRDERLRDAGVLRALGAGSSVVRQTQYAEVLIVGGLAGLMAGVGAIAIGWVLSAYVFD FPYRFNPAILPVGIVSGMACAFVGGWLGLRDVLRRPAMATLRDA
Sequences:
>Translated_844_residues MSRFSVWTQAVRMLRRDWRAGELNLLLVALVLAVAALASVSFLADRMHAGLERDARQLIGADVLVVSDQPLPPDIEAHAH ASGLRVTHTATFPSMASTLTRGASGEPASQLAAIKAVDMGYPLRGTLKVGDDGRDTVGAPIQGIPAAGTVWVDAPLLEAL GIRVGDAIRLGTRTFKIAHVITQELDRGAGFMNFAPRVMLPMSDLGSTGLVTYGSRVTYRLLVAGPDAAAGTFHTWAENE AKTRQLRGVRVESLQNGQPQMRETLDRAERFLSLVALLAAMIAAVAITMAARRYTARHTDAVAVIKCLGLKQRQILGTFA LEFLLIGVMGSAVGVALGYGAHWLLLASLGDLVTVPLPAPSAWPAIVGVTAGLVLLIGFAVPPLLGLVRVAPLRVLRRDV AERAVAAWIGYALGAAAFFALLVVSARDVKLGALTAAGFAGAIVVFALLAAGGLRALAVSLGRGRALSVGWRFALAVLER RRGVSVLQTVALAVGLMALLLLAMTRNDLIRSWHNATPADAPNRFIINIQPDQMQAVAQALAQAGVADPTLYPMVRGRLT QVNGQVIDRQTYAESRARNLVEREFNLSYATTQPPENRIVSGQWFSGQKPEASVEEGIAKTLNLHLGDVLRFDVAGQTVD APITSLRKLDWSSMRVNFFVILPPVALHDMPQTYVTAFRIPAGQADLPAKLVREFPNLTVVDTELILQQVQGVLDQVTAA VEFLFVFTLAAGVLVLYAALSGSRDERLRDAGVLRALGAGSSVVRQTQYAEVLIVGGLAGLMAGVGAIAIGWVLSAYVFD FPYRFNPAILPVGIVSGMACAFVGGWLGLRDVLRRPAMATLRDA >Mature_843_residues SRFSVWTQAVRMLRRDWRAGELNLLLVALVLAVAALASVSFLADRMHAGLERDARQLIGADVLVVSDQPLPPDIEAHAHA SGLRVTHTATFPSMASTLTRGASGEPASQLAAIKAVDMGYPLRGTLKVGDDGRDTVGAPIQGIPAAGTVWVDAPLLEALG IRVGDAIRLGTRTFKIAHVITQELDRGAGFMNFAPRVMLPMSDLGSTGLVTYGSRVTYRLLVAGPDAAAGTFHTWAENEA KTRQLRGVRVESLQNGQPQMRETLDRAERFLSLVALLAAMIAAVAITMAARRYTARHTDAVAVIKCLGLKQRQILGTFAL EFLLIGVMGSAVGVALGYGAHWLLLASLGDLVTVPLPAPSAWPAIVGVTAGLVLLIGFAVPPLLGLVRVAPLRVLRRDVA ERAVAAWIGYALGAAAFFALLVVSARDVKLGALTAAGFAGAIVVFALLAAGGLRALAVSLGRGRALSVGWRFALAVLERR RGVSVLQTVALAVGLMALLLLAMTRNDLIRSWHNATPADAPNRFIINIQPDQMQAVAQALAQAGVADPTLYPMVRGRLTQ VNGQVIDRQTYAESRARNLVEREFNLSYATTQPPENRIVSGQWFSGQKPEASVEEGIAKTLNLHLGDVLRFDVAGQTVDA PITSLRKLDWSSMRVNFFVILPPVALHDMPQTYVTAFRIPAGQADLPAKLVREFPNLTVVDTELILQQVQGVLDQVTAAV EFLFVFTLAAGVLVLYAALSGSRDERLRDAGVLRALGAGSSVVRQTQYAEVLIVGGLAGLMAGVGAIAIGWVLSAYVFDF PYRFNPAILPVGIVSGMACAFVGGWLGLRDVLRRPAMATLRDA
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=824, Percent_Identity=33.252427184466, Blast_Score=355, Evalue=9e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 89908; Mature: 89777
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: PS00651 RIBOSOMAL_L9 ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRFSVWTQAVRMLRRDWRAGELNLLLVALVLAVAALASVSFLADRMHAGLERDARQLIG CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC ADVLVVSDQPLPPDIEAHAHASGLRVTHTATFPSMASTLTRGASGEPASQLAAIKAVDMG CCEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHCCC YPLRGTLKVGDDGRDTVGAPIQGIPAAGTVWVDAPLLEALGIRVGDAIRLGTRTFKIAHV CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCEEECCHHHHHHHH ITQELDRGAGFMNFAPRVMLPMSDLGSTGLVTYGSRVTYRLLVAGPDAAAGTFHTWAENE HHHHHHCCCCCHHCCCCEEEEHHHCCCCCEEEECCCEEEEEEEECCCCCCCCCCHHCCCH AKTRQLRGVRVESLQNGQPQMRETLDRAERFLSLVALLAAMIAAVAITMAARRYTARHTD HHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AVAVIKCLGLKQRQILGTFALEFLLIGVMGSAVGVALGYGAHWLLLASLGDLVTVPLPAP HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEECCCCC SAWPAIVGVTAGLVLLIGFAVPPLLGLVRVAPLRVLRRDVAERAVAAWIGYALGAAAFFA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVVSARDVKLGALTAAGFAGAIVVFALLAAGGLRALAVSLGRGRALSVGWRFALAVLER HHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEHHHHHHHHHHHHH RRGVSVLQTVALAVGLMALLLLAMTRNDLIRSWHNATPADAPNRFIINIQPDQMQAVAQA HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHH LAQAGVADPTLYPMVRGRLTQVNGQVIDRQTYAESRARNLVEREFNLSYATTQPPENRIV HHHCCCCCCHHHHHHHCHHHHCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE SGQWFSGQKPEASVEEGIAKTLNLHLGDVLRFDVAGQTVDAPITSLRKLDWSSMRVNFFV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHCCCCCEEEEEEE ILPPVALHDMPQTYVTAFRIPAGQADLPAKLVREFPNLTVVDTELILQQVQGVLDQVTAA EECCHHHHCCCHHHHHEEECCCCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHH VEFLFVFTLAAGVLVLYAALSGSRDERLRDAGVLRALGAGSSVVRQTQYAEVLIVGGLAG HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEHHHHH LMAGVGAIAIGWVLSAYVFDFPYRFNPAILPVGIVSGMACAFVGGWLGLRDVLRRPAMAT HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH LRDA HCCC >Mature Secondary Structure SRFSVWTQAVRMLRRDWRAGELNLLLVALVLAVAALASVSFLADRMHAGLERDARQLIG CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC ADVLVVSDQPLPPDIEAHAHASGLRVTHTATFPSMASTLTRGASGEPASQLAAIKAVDMG CCEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHCCC YPLRGTLKVGDDGRDTVGAPIQGIPAAGTVWVDAPLLEALGIRVGDAIRLGTRTFKIAHV CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCEEECCHHHHHHHH ITQELDRGAGFMNFAPRVMLPMSDLGSTGLVTYGSRVTYRLLVAGPDAAAGTFHTWAENE HHHHHHCCCCCHHCCCCEEEEHHHCCCCCEEEECCCEEEEEEEECCCCCCCCCCHHCCCH AKTRQLRGVRVESLQNGQPQMRETLDRAERFLSLVALLAAMIAAVAITMAARRYTARHTD HHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AVAVIKCLGLKQRQILGTFALEFLLIGVMGSAVGVALGYGAHWLLLASLGDLVTVPLPAP HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEECCCCC SAWPAIVGVTAGLVLLIGFAVPPLLGLVRVAPLRVLRRDVAERAVAAWIGYALGAAAFFA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVVSARDVKLGALTAAGFAGAIVVFALLAAGGLRALAVSLGRGRALSVGWRFALAVLER HHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEHHHHHHHHHHHHH RRGVSVLQTVALAVGLMALLLLAMTRNDLIRSWHNATPADAPNRFIINIQPDQMQAVAQA HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHH LAQAGVADPTLYPMVRGRLTQVNGQVIDRQTYAESRARNLVEREFNLSYATTQPPENRIV HHHCCCCCCHHHHHHHCHHHHCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE SGQWFSGQKPEASVEEGIAKTLNLHLGDVLRFDVAGQTVDAPITSLRKLDWSSMRVNFFV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHCCCCCEEEEEEE ILPPVALHDMPQTYVTAFRIPAGQADLPAKLVREFPNLTVVDTELILQQVQGVLDQVTAA EECCHHHHCCCHHHHHEEECCCCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHH VEFLFVFTLAAGVLVLYAALSGSRDERLRDAGVLRALGAGSSVVRQTQYAEVLIVGGLAG HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEHHHHH LMAGVGAIAIGWVLSAYVFDFPYRFNPAILPVGIVSGMACAFVGGWLGLRDVLRRPAMAT HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH LRDA HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]