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The map label for this gene is 187929308

Identifier: 187929308

GI number: 187929308

Start: 2340647

End: 2341213

Strand: Direct

Name: 187929308

Synonym: Rpic_2229

Alternate gene names: NA

Gene position: 2340647-2341213 (Clockwise)

Preceding gene: 187929301

Following gene: 187929309

Centisome position: 59.37

GC content: 61.02

Gene sequence:

>567_bases
ATGGCCTCTGAACAGGAACTGTCGGCCTTTCTCCTAAGCGTCGAGAAACGCGCCTTCAAGCAGGCGGTCTTCGCGGTGCG
CGACGACGATGCCGCGCTCGATATCGTGCAGGACGCCATGATCAAGCTGGCCGAGAAATACGGCGACAAGCCCGGGGCTG
AACTGCCCCTGCTGTTTCAGCGCATTCTGCAGAACACGATTCACGACTGGTTTCGCCGCACCAAGGTGCGCAACACGTGG
GTCAGCCTGTTCTCCAGCTTCCGCTCGGACGCCGAAGGCGACGACACCGATCCGCTTGAACTGATTGAAAGCGAAGCCGG
CACCACAGCGGCGGAAAGCAGCGCCGACAAGGTCGAGCGTTCGCAGATGCTCGAGATTCTGGAACGCGAAATCGAGAAAC
TCCCCACACGTCAACGGGAGGCCTTCCTGATGCGTTATTGGGAGGACATGGATGTTGCCGAGACAGCCCAGGCGATGGGC
TGTTCCGAGGGCAGTGTAAAGACACACTGCTCGCGGGCAACACACGCCCTGGCCCAAGCGCTGCGGGCGCGAGGGATCCG
ACTATGA

Upstream 100 bases:

>100_bases
TTTTACGGCCAAGGCCGTTGACGCCACGCGGCGTGATCATCACTTCTTGAGAATGTGAATTTTCGCGCGGCTGCCTCACA
GGATTCGCACCCGCCGTTGT

Downstream 100 bases:

>100_bases
ACAAGGTAGAACTCCGAGAACGCCGTTTTGTGCATGCCGTCCGAACCGCTCTGAACGAGTCGGCCGGACAGTTGCCGCCC
GACGTGCGCGACCGCCTCGC

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPGAELPLLFQRILQNTIHDWFRRTKVRNTW
VSLFSSFRSDAEGDDTDPLELIESEAGTTAAESSADKVERSQMLEILEREIEKLPTRQREAFLMRYWEDMDVAETAQAMG
CSEGSVKTHCSRATHALAQALRARGIRL

Sequences:

>Translated_188_residues
MASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPGAELPLLFQRILQNTIHDWFRRTKVRNTW
VSLFSSFRSDAEGDDTDPLELIESEAGTTAAESSADKVERSQMLEILEREIEKLPTRQREAFLMRYWEDMDVAETAQAMG
CSEGSVKTHCSRATHALAQALRARGIRL
>Mature_187_residues
ASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPGAELPLLFQRILQNTIHDWFRRTKVRNTWV
SLFSSFRSDAEGDDTDPLELIESEAGTTAAESSADKVERSQMLEILEREIEKLPTRQREAFLMRYWEDMDVAETAQAMGC
SEGSVKTHCSRATHALAQALRARGIRL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21255; Mature: 21124

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPGAELPLLFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RILQNTIHDWFRRTKVRNTWVSLFSSFRSDAEGDDTDPLELIESEAGTTAAESSADKVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
SQMLEILEREIEKLPTRQREAFLMRYWEDMDVAETAQAMGCSEGSVKTHCSRATHALAQA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LRARGIRL
HHHCCCCC
>Mature Secondary Structure 
ASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPGAELPLLFQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RILQNTIHDWFRRTKVRNTWVSLFSSFRSDAEGDDTDPLELIESEAGTTAAESSADKVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
SQMLEILEREIEKLPTRQREAFLMRYWEDMDVAETAQAMGCSEGSVKTHCSRATHALAQA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LRARGIRL
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA