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The map label for this gene is yhbU [H]

Identifier: 187929192

GI number: 187929192

Start: 2226818

End: 2227834

Strand: Reverse

Name: yhbU [H]

Synonym: Rpic_2113

Alternate gene names: 187929192

Gene position: 2227834-2226818 (Counterclockwise)

Preceding gene: 187929193

Following gene: 187929191

Centisome position: 56.51

GC content: 64.11

Gene sequence:

>1017_bases
ATGACACAGAACGCTTCCCCCATTGAACTCGTGGCGCCCGCCGGCAGCCTGGCCGCGCTCAAGGCCGCGGTGGAAGCCGG
GGCCGACTCCGTCTACCTCGGCTTGAAGAATGCGACCAACGCGCGCAACTTCGCCGGCCTGAACTTTACCGAGAGCGACA
TCCGCGCCGGCGTCGAATTTGCGCATCGGAAAGGGCGCCAGGTGCTGTTTGCCATCAACACGTTTCCGCAGCCTGGCCGT
GCCATCGAGTGGCGCATGGCAATCGATGCTGCCTACATGCTGGGCGCCGATGCCGTGATCCTGGCCGACCCCGGGCTGAT
GGCCTATGCATGCGAGCGCTATCCCAACCTTCGGCTGCATCTATCCGTGCAGGGTTCGGCAACGCATGCCGATGCCATCG
AGCTGATGCGTGAGCAGTTCGGCATCCACCGCGCCGTCCTGCCACGCGTGCTGACCTTGACCGAAGTCGAACGTGTAATC
CAGCAGACCTCGGCGCAGATTGAGGTGTTCGGCTTTGGCAGCCTGTGCGTGATGGCTGAAGGGCGTTGCCTGCTGTCGTC
GTATGCCACGGGCGATTCTCCCAATAACAAGGGCGTGTGTTCGCCCGCGCATGCGGTGCGCTGGGTGGAGCGCGACGGCA
ACCTGGATGCACGCCTGAACAACATCATGATCGACCAATACGCACCCGGCGAACCGGCTGGATATCCGACGCTGTGCAAG
GGGCGCTTTCTCGTCGACGGTGAGGTCGATCACGCGCTCGAAGAACCCACGAGCCTCAATGCGCTCAGTCTGTTGCCCAG
GCTGCTCGCCATGGGTGTGTCGGCGATCAAGATCGAGGGGCGCCAGCGCAGTCCGGCGTACGTTGCGCAGGTGGTGGCCA
CATTGCGCGCCGCATTGGATGCTGCACAGGCGGACCCGGCGCGCTTCTCGGTCAAGCCCGATTGGCAGGCCGCACTCGTG
CGCCACGCAGAAGGCGCGCACGTCACGCAAGGTGCGTTTGATCGGCCCTGGAAATAG

Upstream 100 bases:

>100_bases
GTGCCGGGCGCTGCTGACGTTTCGCCGTGTCTCGCGAGCGTTTGCGCCCGCTTGACGGAACGCAAAACCACATTGGCTGA
CAAGTCGCAGACTGGCCGCC

Downstream 100 bases:

>100_bases
AAGGCACATCATGTCCTACGAAATTTCGCTTGGTCCGCTGCTGTACTACTGGCCGCGGCTACAGACGTTCGACTTTTACG
CAGAAGTGGCCGCTAGCCCT

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MTQNASPIELVAPAGSLAALKAAVEAGADSVYLGLKNATNARNFAGLNFTESDIRAGVEFAHRKGRQVLFAINTFPQPGR
AIEWRMAIDAAYMLGADAVILADPGLMAYACERYPNLRLHLSVQGSATHADAIELMREQFGIHRAVLPRVLTLTEVERVI
QQTSAQIEVFGFGSLCVMAEGRCLLSSYATGDSPNNKGVCSPAHAVRWVERDGNLDARLNNIMIDQYAPGEPAGYPTLCK
GRFLVDGEVDHALEEPTSLNALSLLPRLLAMGVSAIKIEGRQRSPAYVAQVVATLRAALDAAQADPARFSVKPDWQAALV
RHAEGAHVTQGAFDRPWK

Sequences:

>Translated_338_residues
MTQNASPIELVAPAGSLAALKAAVEAGADSVYLGLKNATNARNFAGLNFTESDIRAGVEFAHRKGRQVLFAINTFPQPGR
AIEWRMAIDAAYMLGADAVILADPGLMAYACERYPNLRLHLSVQGSATHADAIELMREQFGIHRAVLPRVLTLTEVERVI
QQTSAQIEVFGFGSLCVMAEGRCLLSSYATGDSPNNKGVCSPAHAVRWVERDGNLDARLNNIMIDQYAPGEPAGYPTLCK
GRFLVDGEVDHALEEPTSLNALSLLPRLLAMGVSAIKIEGRQRSPAYVAQVVATLRAALDAAQADPARFSVKPDWQAALV
RHAEGAHVTQGAFDRPWK
>Mature_337_residues
TQNASPIELVAPAGSLAALKAAVEAGADSVYLGLKNATNARNFAGLNFTESDIRAGVEFAHRKGRQVLFAINTFPQPGRA
IEWRMAIDAAYMLGADAVILADPGLMAYACERYPNLRLHLSVQGSATHADAIELMREQFGIHRAVLPRVLTLTEVERVIQ
QTSAQIEVFGFGSLCVMAEGRCLLSSYATGDSPNNKGVCSPAHAVRWVERDGNLDARLNNIMIDQYAPGEPAGYPTLCKG
RFLVDGEVDHALEEPTSLNALSLLPRLLAMGVSAIKIEGRQRSPAYVAQVVATLRAALDAAQADPARFSVKPDWQAALVR
HAEGAHVTQGAFDRPWK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=331, Percent_Identity=54.380664652568, Blast_Score=379, Evalue=1e-106,
Organism=Escherichia coli, GI1788397, Length=317, Percent_Identity=31.5457413249211, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI87081910, Length=307, Percent_Identity=29.3159609120521, Blast_Score=101, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 36413; Mature: 36282

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQNASPIELVAPAGSLAALKAAVEAGADSVYLGLKNATNARNFAGLNFTESDIRAGVEF
CCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
AHRKGRQVLFAINTFPQPGRAIEWRMAIDAAYMLGADAVILADPGLMAYACERYPNLRLH
HHCCCCEEEEEEECCCCCCCEEEEEEEHHHHHHHCCCEEEEECCCHHHHHHHCCCCEEEE
LSVQGSATHADAIELMREQFGIHRAVLPRVLTLTEVERVIQQTSAQIEVFGFGSLCVMAE
EEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEC
GRCLLSSYATGDSPNNKGVCSPAHAVRWVERDGNLDARLNNIMIDQYAPGEPAGYPTLCK
CCEEEECCCCCCCCCCCCCCCHHHHHEEECCCCCCCEEECEEEEECCCCCCCCCCCCEEC
GRFLVDGEVDHALEEPTSLNALSLLPRLLAMGVSAIKIEGRQRSPAYVAQVVATLRAALD
CEEEECCCHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
AAQADPARFSVKPDWQAALVRHAEGAHVTQGAFDRPWK
HHCCCCCEEECCCCHHHHHHHCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
TQNASPIELVAPAGSLAALKAAVEAGADSVYLGLKNATNARNFAGLNFTESDIRAGVEF
CCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
AHRKGRQVLFAINTFPQPGRAIEWRMAIDAAYMLGADAVILADPGLMAYACERYPNLRLH
HHCCCCEEEEEEECCCCCCCEEEEEEEHHHHHHHCCCEEEEECCCHHHHHHHCCCCEEEE
LSVQGSATHADAIELMREQFGIHRAVLPRVLTLTEVERVIQQTSAQIEVFGFGSLCVMAE
EEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEC
GRCLLSSYATGDSPNNKGVCSPAHAVRWVERDGNLDARLNNIMIDQYAPGEPAGYPTLCK
CCEEEECCCCCCCCCCCCCCCHHHHHEEECCCCCCCEEECEEEEECCCCCCCCCCCCEEC
GRFLVDGEVDHALEEPTSLNALSLLPRLLAMGVSAIKIEGRQRSPAYVAQVVATLRAALD
CEEEECCCHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
AAQADPARFSVKPDWQAALVRHAEGAHVTQGAFDRPWK
HHCCCCCEEECCCCHHHHHHHCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]