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The map label for this gene is nocR [H]

Identifier: 187929160

GI number: 187929160

Start: 2189991

End: 2190965

Strand: Direct

Name: nocR [H]

Synonym: Rpic_2081

Alternate gene names: 187929160

Gene position: 2189991-2190965 (Clockwise)

Preceding gene: 187929159

Following gene: 187929161

Centisome position: 55.55

GC content: 67.38

Gene sequence:

>975_bases
ATGGAACTCCGACAACTCGAAGCCTTTGCCGCGGTCATGTCGACCGGCAGTGTCACTGCGGCGGGCAAGCTGCTGGGACG
CTCGCAGCCCGCCATCAGCCGGCTCATCCAGGATCTCGAAGCCGAAATCGGCTACGCCCTGTTCACACGCGCGGGGCCGC
GCGTCTCGCCAACGGAGCAGGGTTTCCTGCTGTACGAAGACGTCGAGCACACGCTGATCAGCTTACGTCAGATCCGAACC
CGTGCCGAAGAAATCGCGCGCGGCGAGGCACGCCCGCTGCGCCTGGCAGCGACGTCCGCATTGGCGGCCGGCTTGCTGCC
CGCTGCGTTGGCCGATGAGCCGGAACTCGCGCAACACATCCAGATTCGCAGCGCCTCGCCGGAACAGGTTGTGCACGCCG
TGCTGACCGGCGCTGCCGACCTTGGCCTCAGCAGCCTGCCGCTGGAACATCGCGGCGTAACCGTGCATTGGATCGGCGAA
GCCGCGTGCGTGGCTGCTGTGCAGACACACGACCCGCTGGCGGCCGGCAAGCGCGTGGTATTGGGCGATTGCGCGGGACA
GCCCATCATCACGATGCACAACCCATATCGATTGCGCCGCCGTCTGGACCAGGCGCTGGCGAGGGCCGGCGTGGAACCCA
CCTCCCTCATCGAGACCAACGCATCGCTCAATGCACTGACCGCCGTGCGAGCGGGCCTGGGCGTCGCGTTGCTGGAGCCG
GTGACGGCCTACGGCGTGCCGATCGACGGCGTGACCGTGCGCCCGATCGACGCCGACATTCCCTTCTTCTTTGGCGTGAT
CACCCCCGAGGCCAAGCGGCCGTCGGCGGCGGTGACCTCATTGACCGACGCCCTCGCGCGCGCGGCACAGCGCCTGCTGC
CGGACTGCAAGCTGCACGCTCCGGCACGCCATGCCAGCATGCTGCAGGTGCTGTATGGCGAATCCATCAACGAAACCGAA
GGCGCGTCCGCATGA

Upstream 100 bases:

>100_bases
CGCAAAACGCATGAGTACATAAGAAAATACTATTTTGAATTCGCATAGTGCCTCTACCAGAATGCACAAACCACATGCAT
GACTGGGATCAAACAGGCGG

Downstream 100 bases:

>100_bases
CCGCTGCACAGCAAGACAACGCGCTGCAAGTGACCGGGCTCGCAGCGCTCGAAGCCCGTTTGCACCAGGACCTGTCGTGG
TTGGAGCTGCCCGCGAAGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTRAGPRVSPTEQGFLLYEDVEHTLISLRQIRT
RAEEIARGEARPLRLAATSALAAGLLPAALADEPELAQHIQIRSASPEQVVHAVLTGAADLGLSSLPLEHRGVTVHWIGE
AACVAAVQTHDPLAAGKRVVLGDCAGQPIITMHNPYRLRRRLDQALARAGVEPTSLIETNASLNALTAVRAGLGVALLEP
VTAYGVPIDGVTVRPIDADIPFFFGVITPEAKRPSAAVTSLTDALARAAQRLLPDCKLHAPARHASMLQVLYGESINETE
GASA

Sequences:

>Translated_324_residues
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTRAGPRVSPTEQGFLLYEDVEHTLISLRQIRT
RAEEIARGEARPLRLAATSALAAGLLPAALADEPELAQHIQIRSASPEQVVHAVLTGAADLGLSSLPLEHRGVTVHWIGE
AACVAAVQTHDPLAAGKRVVLGDCAGQPIITMHNPYRLRRRLDQALARAGVEPTSLIETNASLNALTAVRAGLGVALLEP
VTAYGVPIDGVTVRPIDADIPFFFGVITPEAKRPSAAVTSLTDALARAAQRLLPDCKLHAPARHASMLQVLYGESINETE
GASA
>Mature_324_residues
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTRAGPRVSPTEQGFLLYEDVEHTLISLRQIRT
RAEEIARGEARPLRLAATSALAAGLLPAALADEPELAQHIQIRSASPEQVVHAVLTGAADLGLSSLPLEHRGVTVHWIGE
AACVAAVQTHDPLAAGKRVVLGDCAGQPIITMHNPYRLRRRLDQALARAGVEPTSLIETNASLNALTAVRAGLGVALLEP
VTAYGVPIDGVTVRPIDADIPFFFGVITPEAKRPSAAVTSLTDALARAAQRLLPDCKLHAPARHASMLQVLYGESINETE
GASA

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=282, Percent_Identity=30.1418439716312, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788481, Length=241, Percent_Identity=31.9502074688797, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787879, Length=270, Percent_Identity=30, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787530, Length=250, Percent_Identity=28.8, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI157672245, Length=231, Percent_Identity=24.6753246753247, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI2367136, Length=291, Percent_Identity=25.4295532646048, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=27.0491803278689, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693105, Length=297, Percent_Identity=24.2424242424242, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34259; Mature: 34259

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTRAGPRVSPTEQ
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCC
GFLLYEDVEHTLISLRQIRTRAEEIARGEARPLRLAATSALAAGLLPAALADEPELAQHI
CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHH
QIRSASPEQVVHAVLTGAADLGLSSLPLEHRGVTVHWIGEAACVAAVQTHDPLAAGKRVV
HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHCCEEE
LGDCAGQPIITMHNPYRLRRRLDQALARAGVEPTSLIETNASLNALTAVRAGLGVALLEP
EECCCCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHEECCCCHHHHHHHHHCCCHHHHHH
VTAYGVPIDGVTVRPIDADIPFFFGVITPEAKRPSAAVTSLTDALARAAQRLLPDCKLHA
HHHCCCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PARHASMLQVLYGESINETEGASA
CHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTRAGPRVSPTEQ
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCC
GFLLYEDVEHTLISLRQIRTRAEEIARGEARPLRLAATSALAAGLLPAALADEPELAQHI
CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHH
QIRSASPEQVVHAVLTGAADLGLSSLPLEHRGVTVHWIGEAACVAAVQTHDPLAAGKRVV
HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHCCEEE
LGDCAGQPIITMHNPYRLRRRLDQALARAGVEPTSLIETNASLNALTAVRAGLGVALLEP
EECCCCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHEECCCCHHHHHHHHHCCCHHHHHH
VTAYGVPIDGVTVRPIDADIPFFFGVITPEAKRPSAAVTSLTDALARAAQRLLPDCKLHA
HHHCCCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PARHASMLQVLYGESINETEGASA
CHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]