Click here to switch to the map view.

The map label for this gene is ybhD [H]

Identifier: 187929141

GI number: 187929141

Start: 2173490

End: 2174458

Strand: Direct

Name: ybhD [H]

Synonym: Rpic_2062

Alternate gene names: 187929141

Gene position: 2173490-2174458 (Clockwise)

Preceding gene: 187929138

Following gene: 187929144

Centisome position: 55.13

GC content: 66.05

Gene sequence:

>969_bases
ATGCGTGACCTCGATCTAACCACCCTACGCCTGTTCGTTGCCGTGTGCGAGACACGCAACATGGCGCGCGCCGGCGAACA
GGAGAACATCGTTGCGTCGGCCATCAGCAAGCGGCTGGCGCAGCTGGAAGACACCGTGGGCACGGTCCTGCTTGAACGCG
GACGGCGCGGTGTGATTCCTACGCCGGCGGGCGACATCGTGCTGGCCCACGCGCGCGCCATGTTGGCCGCTGCCGACCGG
GTGGCACGCGACATGGCTGATTACGGCAGCGGCATCCGGGGGCAGGTTCGCTTGCTGGCCACCGTATCGTCGATGGCCGA
ATCGTTGCCCGACGATATCGCCGCATTCCTCAACCGGCCCGAGCACCGCGATATCCGCGTGACGATGGAAGAAAGCATGA
GCAGCGACATCGTGCGCGCTCTGCGCGAGGGCTCCGCACCGCTGGGCATCTGCTGGGATGCGGCTGACCTGGAGGGGTTC
GAGACCCGGCCGTACCGCGCCGACCACCTGGCCGTGGCCGTGCACGAAGCGCACCCGCTGGCACCGCGTGAGCATTGCCG
CTTTGAAGACACGCTGGAGTTCGATCACGTGGGCTTGCCGGCGCAGACGGCCGTGCACACAATGCTTGCGCGTTATGCGG
CGATCCTGGGCCACACGATCAAGTACCGCGCCGTGGTGTCGACCTTCGATGCATCGCTGCGCTGCGTGCGCGCGGGCCTC
GGCCTGGCCATCGTGCCGGGTGAGATTGCCGAGCCGTTTATCCCGACCTTTGGCCTGCGTGTGGTGCCGTTGAGCGACGA
CTGGGCGCGTCGCCGTTTTACGGTGTGCTTTCGCAACCTGGAATCGTTGTCGCCGGCGGCGCGACTGCTCGTTGAGCATC
TGGCAGCGTGCGACGCCACTGCCGCTATCGAACCGACAACACCTGCCCGGCAAAAGAAAACGACGCGGAAAACCACTTCC
GCGTCGTGA

Upstream 100 bases:

>100_bases
CCTGGAAGCGGCGTACGGGCATTCCAGAATTTCCTGCAGCACCAGCAAGCGCTACCATTTCCGCGTCTTCGTTCCCGACC
GGAATGCCTCGCGGAGCCCC

Downstream 100 bases:

>100_bases
GCGCTACGGTGTTCCGGTGGGGCTAGTGCGACAGCTCTTCCAGCCGCAGGCCGTTGCTCTTCGGCCCGAAGCCGCCAATC
GCCAGCATCACCACCAGCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MRDLDLTTLRLFVAVCETRNMARAGEQENIVASAISKRLAQLEDTVGTVLLERGRRGVIPTPAGDIVLAHARAMLAAADR
VARDMADYGSGIRGQVRLLATVSSMAESLPDDIAAFLNRPEHRDIRVTMEESMSSDIVRALREGSAPLGICWDAADLEGF
ETRPYRADHLAVAVHEAHPLAPREHCRFEDTLEFDHVGLPAQTAVHTMLARYAAILGHTIKYRAVVSTFDASLRCVRAGL
GLAIVPGEIAEPFIPTFGLRVVPLSDDWARRRFTVCFRNLESLSPAARLLVEHLAACDATAAIEPTTPARQKKTTRKTTS
AS

Sequences:

>Translated_322_residues
MRDLDLTTLRLFVAVCETRNMARAGEQENIVASAISKRLAQLEDTVGTVLLERGRRGVIPTPAGDIVLAHARAMLAAADR
VARDMADYGSGIRGQVRLLATVSSMAESLPDDIAAFLNRPEHRDIRVTMEESMSSDIVRALREGSAPLGICWDAADLEGF
ETRPYRADHLAVAVHEAHPLAPREHCRFEDTLEFDHVGLPAQTAVHTMLARYAAILGHTIKYRAVVSTFDASLRCVRAGL
GLAIVPGEIAEPFIPTFGLRVVPLSDDWARRRFTVCFRNLESLSPAARLLVEHLAACDATAAIEPTTPARQKKTTRKTTS
AS
>Mature_322_residues
MRDLDLTTLRLFVAVCETRNMARAGEQENIVASAISKRLAQLEDTVGTVLLERGRRGVIPTPAGDIVLAHARAMLAAADR
VARDMADYGSGIRGQVRLLATVSSMAESLPDDIAAFLNRPEHRDIRVTMEESMSSDIVRALREGSAPLGICWDAADLEGF
ETRPYRADHLAVAVHEAHPLAPREHCRFEDTLEFDHVGLPAQTAVHTMLARYAAILGHTIKYRAVVSTFDASLRCVRAGL
GLAIVPGEIAEPFIPTFGLRVVPLSDDWARRRFTVCFRNLESLSPAARLLVEHLAACDATAAIEPTTPARQKKTTRKTTS
AS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=283, Percent_Identity=23.6749116607774, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=26.7558528428094, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=295, Percent_Identity=24.0677966101695, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87081904, Length=199, Percent_Identity=30.1507537688442, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35169; Mature: 35169

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS50931 HTH_LYSR ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLDLTTLRLFVAVCETRNMARAGEQENIVASAISKRLAQLEDTVGTVLLERGRRGVIP
CCCCHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TPAGDIVLAHARAMLAAADRVARDMADYGSGIRGQVRLLATVSSMAESLPDDIAAFLNRP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCC
EHRDIRVTMEESMSSDIVRALREGSAPLGICWDAADLEGFETRPYRADHLAVAVHEAHPL
CCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
APREHCRFEDTLEFDHVGLPAQTAVHTMLARYAAILGHTIKYRAVVSTFDASLRCVRAGL
CCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
GLAIVPGEIAEPFIPTFGLRVVPLSDDWARRRFTVCFRNLESLSPAARLLVEHLAACDAT
CEEEECCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
AAIEPTTPARQKKTTRKTTSAS
CCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MRDLDLTTLRLFVAVCETRNMARAGEQENIVASAISKRLAQLEDTVGTVLLERGRRGVIP
CCCCHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TPAGDIVLAHARAMLAAADRVARDMADYGSGIRGQVRLLATVSSMAESLPDDIAAFLNRP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCC
EHRDIRVTMEESMSSDIVRALREGSAPLGICWDAADLEGFETRPYRADHLAVAVHEAHPL
CCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
APREHCRFEDTLEFDHVGLPAQTAVHTMLARYAAILGHTIKYRAVVSTFDASLRCVRAGL
CCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
GLAIVPGEIAEPFIPTFGLRVVPLSDDWARRRFTVCFRNLESLSPAARLLVEHLAACDAT
CEEEECCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
AAIEPTTPARQKKTTRKTTSAS
CCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]