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The map label for this gene is yjfH [C]

Identifier: 187928382

GI number: 187928382

Start: 1388808

End: 1389590

Strand: Direct

Name: yjfH [C]

Synonym: Rpic_1293

Alternate gene names: 187928382

Gene position: 1388808-1389590 (Clockwise)

Preceding gene: 187928381

Following gene: 187928383

Centisome position: 35.23

GC content: 64.75

Gene sequence:

>783_bases
GTGAAGCACATCACTTCCCGCGACAACGCGGTGTTCAAGCATCTCAAGGCGCTCTCGGGCTCGACGCAGCACCGTCGGCG
CGCGGGGCAATCCGTGCTCGATGGCGTGCACCTGGTGGTGGCGTATCTGGATGCGGGCCACATGCCGGTGCAATGCCTGG
TTTCGGAGCGCCATGTCCGGCATCCGGAAGTGGCTGCGGTGCTCGACCGTGTCGATCCGGACACCGTCATCCTGCTGGCC
GATAACCTGTTTGGCCAGCTCACCACGGTCGTCAACGGCGTCGACCTGATGGCCCTGGTGGAGACGGCGGAAGGCAAGCT
GCCGCAAACCATTGATGCGGACTGCGTGATTCTTGATGGCATTCAGGATGCCGGCAACGTCGGTTCCATCCTGCGATGTG
CGGCCGCTGCCGGCGTGCGCGATGTGTTCATGACGCCAGGCTGCGCGTTCGCGTGGTCGGCCAAGACATTGCGCGCCGCC
ATGGGTGCGCATTTCCACCTGAACATCGTTGAACACTGCACGTTCCAAAGCGTGCATTCGCGGCTCCGGGTGCCGCTGCT
GGCAACGTCGTCGCACGCCAAGCAGGCTGTTTTCGATGTGCCGCTCAGTTCACCCGTAGGCTGGGTGTTCGGAAACGAGG
GGGCGGGCGTGTCGCAGGAGTGGCTCTCTGCGGTGACGACCCCCGTGACGATTCCACAGCCGGGCGGCATGGAGTCGCTC
AACGTGGCTGCCGCAGCAGCGATCTGCCTGTTCGAGGCCGTGCGACAACGCCGCGCGGGCTAA

Upstream 100 bases:

>100_bases
CCCGTGCGTCGTGCGTTGGAGGGGATGAGCGCCATCAGCATCGAAACCGTCGCTGCAGGCAGCGCCTGGGACGACTGACC
TTTTTCCGCTGGGCCCATTC

Downstream 100 bases:

>100_bases
CCCTCTCTTTTTCCTGTCGATTACCGGTCACACGGCGTTTTCAAACGCCAGAGCAGTCTCGCATTGACTTTGCCATTGAG
TAATGGAACATTGATCGCGG

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKHITSRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPVQCLVSERHVRHPEVAAVLDRVDPDTVILLA
DNLFGQLTTVVNGVDLMALVETAEGKLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAA
MGAHFHLNIVEHCTFQSVHSRLRVPLLATSSHAKQAVFDVPLSSPVGWVFGNEGAGVSQEWLSAVTTPVTIPQPGGMESL
NVAAAAAICLFEAVRQRRAG

Sequences:

>Translated_260_residues
MKHITSRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPVQCLVSERHVRHPEVAAVLDRVDPDTVILLA
DNLFGQLTTVVNGVDLMALVETAEGKLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAA
MGAHFHLNIVEHCTFQSVHSRLRVPLLATSSHAKQAVFDVPLSSPVGWVFGNEGAGVSQEWLSAVTTPVTIPQPGGMESL
NVAAAAAICLFEAVRQRRAG
>Mature_260_residues
MKHITSRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPVQCLVSERHVRHPEVAAVLDRVDPDTVILLA
DNLFGQLTTVVNGVDLMALVETAEGKLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAA
MGAHFHLNIVEHCTFQSVHSRLRVPLLATSSHAKQAVFDVPLSSPVGWVFGNEGAGVSQEWLSAVTTPVTIPQPGGMESL
NVAAAAAICLFEAVRQRRAG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=295, Percent_Identity=27.7966101694915, Blast_Score=78, Evalue=7e-15,
Organism=Escherichia coli, GI1790623, Length=145, Percent_Identity=31.0344827586207, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27664; Mature: 27664

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHITSRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPVQCLVSERHVR
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
HPEVAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETAEGKLPQTIDADCVILDG
CHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEEC
IQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFQSVHS
CCCCCCHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHH
RLRVPLLATSSHAKQAVFDVPLSSPVGWVFGNEGAGVSQEWLSAVTTPVTIPQPGGMESL
HHCCCEEECCCHHHHHEEECCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCHH
NVAAAAAICLFEAVRQRRAG
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKHITSRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPVQCLVSERHVR
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
HPEVAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETAEGKLPQTIDADCVILDG
CHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEEC
IQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFQSVHS
CCCCCCHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHH
RLRVPLLATSSHAKQAVFDVPLSSPVGWVFGNEGAGVSQEWLSAVTTPVTIPQPGGMESL
HHCCCEEECCCHHHHHEEECCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCHH
NVAAAAAICLFEAVRQRRAG
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]