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The map label for this gene is yfdE [H]

Identifier: 187928337

GI number: 187928337

Start: 1335754

End: 1336860

Strand: Reverse

Name: yfdE [H]

Synonym: Rpic_1248

Alternate gene names: 187928337

Gene position: 1336860-1335754 (Counterclockwise)

Preceding gene: 187928338

Following gene: 187928332

Centisome position: 33.91

GC content: 67.75

Gene sequence:

>1107_bases
ATGACATCGCCCTCGCCGGACACCGCCACGCACCAGCCATTGGCCGGCGTGCGCGTGCTCGACCTGACGCGCCTGCTGCC
CGGCCCGGCCGCCACGCGGCACTTGGCCGACCTCGGCGCTGAAGTCATCAAGATCGAAGACCCCGGCCCCGGCGACTACG
CCCGCGACATGATGCGCACCTCCGCTGACCGCGCGGCCGAACGCCCGAGCCTGTTCTTCCGCTCGCTCAATCGCGGCAAG
ACCGAAATGCGGCTCGACCTGAAACGCGCCGAAGACCGCGACGCGCTCATCGAACTCGTACGCCACGCCAATGTGCTGAT
CGAAAGCTTCCGCCCTGGCGTCATGGCGCGCCTCGGGGTCGGCTGGGACACGCTGCGCGCGGCCAACCCCGCGCTCGTCA
TGTGTTCCATCAGCGGCTACGGCCAGGACGGCCCGCTCGCGCAAGCCGCCGGCCACGACATCAACTACGTCGGCTATGCG
GGCATGCTCGATCAGCTTGCCAGCGCGGATGGCACGCCCATCGTCCCGAACGTGCAGATCGGCGACCTGCTGGGCGGCGC
GCTCACGGCGGTGGTCGGCATCCTGGCTGCGCTGGTCGACGCGCGCGCCACGGGCCGCGGCCGCTACGTCGATGTATCGA
TGACGGATTCGGTGTTCGCGCACAACCTGATGGCGTTCTTTGCCGTCGGCACGCGCGGCAAGGCCAGCCCCGCGGGCACC
GATCTGCTCAATGGCGGCGTGCCGTGCTACGGCGTATATCGCACGGCGGACGATCGCTTCATGGCCGTCGGCGCGCTCGA
ATTGAAGTTCTGGCAGGCGATGTGCGATGTCATCGAAAAGCCCGAATGGAAAGAGCGGCACTGGGCGCTCGGCCAGCGCG
TCGGCGGCGATGACGCACGCGCCATTCGCGACGAACTTGCTGCGCGCTTCCTGACCGCCACCCAAGCCGAATGGACCGCG
CGTTTTGCCGATGCCGATTGCTGTGTCACGCCCGTGCTGCGCATGGAAGAAGCGCTGCAACATCCGCTCTTTGTCGAGCG
CAACAGCGTGGTGAAGGAGAACGGCGAGCCCGTGCAGCTTGCCTTGCCGCTACGGTTTGCCGATTGA

Upstream 100 bases:

>100_bases
AACGCCGAACTCGACGAGCTGGAAGAACGCTGGCTCGAGCTGCACGAACAACTCGAACAAATCAATTGAGGCTGGCGCGT
CCGGCCAAGGAGACCTGTTG

Downstream 100 bases:

>100_bases
CGAATCGGCGCGATCCTGCGCGTCGAGCGCATCGAGCAGCCGCCCGGCTTCTTCCAGCTGGTGCTGGCTGAATATGCGGA
TGCCATGTTGGCGCAGCAGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MTSPSPDTATHQPLAGVRVLDLTRLLPGPAATRHLADLGAEVIKIEDPGPGDYARDMMRTSADRAAERPSLFFRSLNRGK
TEMRLDLKRAEDRDALIELVRHANVLIESFRPGVMARLGVGWDTLRAANPALVMCSISGYGQDGPLAQAAGHDINYVGYA
GMLDQLASADGTPIVPNVQIGDLLGGALTAVVGILAALVDARATGRGRYVDVSMTDSVFAHNLMAFFAVGTRGKASPAGT
DLLNGGVPCYGVYRTADDRFMAVGALELKFWQAMCDVIEKPEWKERHWALGQRVGGDDARAIRDELAARFLTATQAEWTA
RFADADCCVTPVLRMEEALQHPLFVERNSVVKENGEPVQLALPLRFAD

Sequences:

>Translated_368_residues
MTSPSPDTATHQPLAGVRVLDLTRLLPGPAATRHLADLGAEVIKIEDPGPGDYARDMMRTSADRAAERPSLFFRSLNRGK
TEMRLDLKRAEDRDALIELVRHANVLIESFRPGVMARLGVGWDTLRAANPALVMCSISGYGQDGPLAQAAGHDINYVGYA
GMLDQLASADGTPIVPNVQIGDLLGGALTAVVGILAALVDARATGRGRYVDVSMTDSVFAHNLMAFFAVGTRGKASPAGT
DLLNGGVPCYGVYRTADDRFMAVGALELKFWQAMCDVIEKPEWKERHWALGQRVGGDDARAIRDELAARFLTATQAEWTA
RFADADCCVTPVLRMEEALQHPLFVERNSVVKENGEPVQLALPLRFAD
>Mature_367_residues
TSPSPDTATHQPLAGVRVLDLTRLLPGPAATRHLADLGAEVIKIEDPGPGDYARDMMRTSADRAAERPSLFFRSLNRGKT
EMRLDLKRAEDRDALIELVRHANVLIESFRPGVMARLGVGWDTLRAANPALVMCSISGYGQDGPLAQAAGHDINYVGYAG
MLDQLASADGTPIVPNVQIGDLLGGALTAVVGILAALVDARATGRGRYVDVSMTDSVFAHNLMAFFAVGTRGKASPAGTD
LLNGGVPCYGVYRTADDRFMAVGALELKFWQAMCDVIEKPEWKERHWALGQRVGGDDARAIRDELAARFLTATQAEWTAR
FADADCCVTPVLRMEEALQHPLFVERNSVVKENGEPVQLALPLRFAD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=345, Percent_Identity=33.6231884057971, Blast_Score=196, Evalue=4e-50,
Organism=Homo sapiens, GI42794625, Length=345, Percent_Identity=33.6231884057971, Blast_Score=195, Evalue=4e-50,
Organism=Homo sapiens, GI300863128, Length=370, Percent_Identity=30, Blast_Score=168, Evalue=6e-42,
Organism=Homo sapiens, GI300863124, Length=347, Percent_Identity=30.2593659942363, Blast_Score=166, Evalue=2e-41,
Organism=Homo sapiens, GI266458393, Length=261, Percent_Identity=35.2490421455939, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI266458397, Length=261, Percent_Identity=35.2490421455939, Blast_Score=162, Evalue=4e-40,
Organism=Homo sapiens, GI13376042, Length=347, Percent_Identity=28.2420749279539, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI300863126, Length=368, Percent_Identity=25.8152173913043, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI266458395, Length=148, Percent_Identity=37.1621621621622, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI42822893, Length=148, Percent_Identity=37.1621621621622, Blast_Score=96, Evalue=8e-20,
Organism=Escherichia coli, GI87082093, Length=349, Percent_Identity=32.378223495702, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1788717, Length=383, Percent_Identity=29.5039164490862, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1786222, Length=350, Percent_Identity=26.5714285714286, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=350, Percent_Identity=34.2857142857143, Blast_Score=187, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI115535051, Length=352, Percent_Identity=34.375, Blast_Score=180, Evalue=9e-46,
Organism=Drosophila melanogaster, GI24585488, Length=341, Percent_Identity=35.7771260997067, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI24648431, Length=386, Percent_Identity=29.2746113989637, Blast_Score=134, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39781; Mature: 39650

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPSPDTATHQPLAGVRVLDLTRLLPGPAATRHLADLGAEVIKIEDPGPGDYARDMMRT
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
SADRAAERPSLFFRSLNRGKTEMRLDLKRAEDRDALIELVRHANVLIESFRPGVMARLGV
HHHHHHCCHHHHHHHHCCCCHHEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCC
GWDTLRAANPALVMCSISGYGQDGPLAQAAGHDINYVGYAGMLDQLASADGTPIVPNVQI
CHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCH
GDLLGGALTAVVGILAALVDARATGRGRYVDVSMTDSVFAHNLMAFFAVGTRGKASPAGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC
DLLNGGVPCYGVYRTADDRFMAVGALELKFWQAMCDVIEKPEWKERHWALGQRVGGDDAR
HHHCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHH
AIRDELAARFLTATQAEWTARFADADCCVTPVLRMEEALQHPLFVERNSVVKENGEPVQL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCHHHCCCCEEEE
ALPLRFAD
EEEEEECC
>Mature Secondary Structure 
TSPSPDTATHQPLAGVRVLDLTRLLPGPAATRHLADLGAEVIKIEDPGPGDYARDMMRT
CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
SADRAAERPSLFFRSLNRGKTEMRLDLKRAEDRDALIELVRHANVLIESFRPGVMARLGV
HHHHHHCCHHHHHHHHCCCCHHEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCC
GWDTLRAANPALVMCSISGYGQDGPLAQAAGHDINYVGYAGMLDQLASADGTPIVPNVQI
CHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCH
GDLLGGALTAVVGILAALVDARATGRGRYVDVSMTDSVFAHNLMAFFAVGTRGKASPAGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC
DLLNGGVPCYGVYRTADDRFMAVGALELKFWQAMCDVIEKPEWKERHWALGQRVGGDDAR
HHHCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHH
AIRDELAARFLTATQAEWTARFADADCCVTPVLRMEEALQHPLFVERNSVVKENGEPVQL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCHHHCCCCEEEE
ALPLRFAD
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]