| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is arnT [H]
Identifier: 187928288
GI number: 187928288
Start: 1285719
End: 1287389
Strand: Reverse
Name: arnT [H]
Synonym: Rpic_1199
Alternate gene names: 187928288
Gene position: 1287389-1285719 (Counterclockwise)
Preceding gene: 187928289
Following gene: 187928287
Centisome position: 32.65
GC content: 63.91
Gene sequence:
>1671_bases ATGCCGATCGACCGCACCGCTCAAGCGCCCTCCCTACCCTGGCGCAATGCCTCCCTGTGGCTGCTGGCTGCTGCGTTGCT CGCTGTCTGGCTCGGTACGCTGGGCTATCGGCACCTGATTCCCACCGACGAAGGCCGCTACGCCGAAATCGCGCGCGAGA TGTTCGTCTCCGGCGACTGGGTAACCATCCGCTACAACGCCCTGAAGTATTTCGAAAAGCCGCCGCTGCAGATGTGGGGC ACCGCACTCGCCTATACGCTGTTCGGCATCGGCGACTGGCAGGCGCGCCTGTTCACCGCGCTTTCCGGCATCGTCGGCAT TGTGTTCACGATGCTGGCGGCGGCGCGCTGGTGGGGCAAGCGGACGGCGATCATCAGCGGGCTGGTGCTCGTGAGCGCGC CCCTGTGGAACGTCGGTTCGCACTTCAATTCGCTCGACATGGGCGTGGCCGGCTGCATGACGATGGCGCTGGGTGCGCTG CTGCTCGCCCAGCATCCGGATGCCACACGCGCTCAACAACGCGGCTGGATGTGGGCCTGCTGGGCGTCGATGGCGCTCGC GGTGCTGAGCAAGGGCCTGATCGGCGTGGTGCTGCCAGGCTTTGTGCTCGTGGTCTACACGCTGATCGCGCGCGACTGGG CCCTGTGGAAACGATTGCATCTTCTGACCGGACTGATCGTCTTCTTTGCCGTGGGCGCGCCGTGGTTTGTGTTGATCTCG ATGCGCAACCCCGAATTCGCCTGGTTCTTCTTCGTGCACGAGCACTTCCAGCGCTTCACGTCGACCGTGCACAACCGCAA CGCGCCGCTCTGGTATTTCGTTCCTCTGCTGGTCGCCGGTTTCCTGCCTTGGCTGGCACAATTGCCCGGCGCCGCGCGCC TAACCATGGCGCGCGCCGAAACCGCGAGTAACGGCTTCCGCCCGACGCTGGTGCTCGGCCTGTGGGCCGTCCTGATCTTC GCGTTTTTCAGCATTTCGGACTCGAAGCTGCCGGGTTACATCTTCCCGATCATTCCCGCGCTGGCGATTCTGGCGGCCTT GGTGCTCGAGCACACCAGCGAGCCCGCATGGCGCTGGCAACTCAAGGCCTTCCTGGCGCTGGCACTGGTTGGCCTTGCGG CCAGCGGTTACGTGGCAACCATGTCGTCGGAGATGTACCCGAACGCAGTGTTTTCTAGGTTTGCGATGTTCCTGGTTGTG GCGTTCGTGGCGGGAGCCGGGTTGACGTGGCTCGCGCTTCGCCTGGCGGACAGGCGCTTTGAAAGCGTGGCTGCATTTGC GTGCGCTTGGTTCCTTACCTTTACAGCGGCGATGCTCGGTCACGAGGCATTTGGGCGCTCCATGTCGGGTATCGATCTCG TGCCGGCCGTCAAGGCGTGGCTCAAGCCAGACGTTCCGTTCTATGCGGTGGAGCGTCTGGACCATACAATGCCGTTTTAC CTCGGCAGGGCCATCATCATGGTGCAGGAACCCGACGAATTGGCCTTTGGCGTCGAACAGGAGCCGGCCAAATGGGTTCC GACCACCGAAGCGTTCGTGGCCCGCTGGAAAGCCGGCGGCCAAGCTGTCGCCATGATGGGACCGGGCACCTATGACCGGC TGACAGCCCAGAGCGTACCGATGATCGTGATCGCCCGCGATGCCCGCCGCGTGATTGTCCGGCGCAACTAG
Upstream 100 bases:
>100_bases GACGCCATGGACCTGCAGGCGGCCGGTCGCACGTACAACATCCTGATGCTGGAAGGCCGCAAGGTGGCCGCCGCCCTGCT GATCGAGCGTGCCTGACCGC
Downstream 100 bases:
>100_bases GTTTTACCGCCACGGATTCTCGAAAGGGGCGCGCAAGCGGAATTGTCGTAACATGCGCCCCGACGGCGGGATTGAGAACA TCCGCACGGGGAAACCGCCG
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 556; Mature: 555
Protein sequence:
>556_residues MPIDRTAQAPSLPWRNASLWLLAAALLAVWLGTLGYRHLIPTDEGRYAEIAREMFVSGDWVTIRYNALKYFEKPPLQMWG TALAYTLFGIGDWQARLFTALSGIVGIVFTMLAAARWWGKRTAIISGLVLVSAPLWNVGSHFNSLDMGVAGCMTMALGAL LLAQHPDATRAQQRGWMWACWASMALAVLSKGLIGVVLPGFVLVVYTLIARDWALWKRLHLLTGLIVFFAVGAPWFVLIS MRNPEFAWFFFVHEHFQRFTSTVHNRNAPLWYFVPLLVAGFLPWLAQLPGAARLTMARAETASNGFRPTLVLGLWAVLIF AFFSISDSKLPGYIFPIIPALAILAALVLEHTSEPAWRWQLKAFLALALVGLAASGYVATMSSEMYPNAVFSRFAMFLVV AFVAGAGLTWLALRLADRRFESVAAFACAWFLTFTAAMLGHEAFGRSMSGIDLVPAVKAWLKPDVPFYAVERLDHTMPFY LGRAIIMVQEPDELAFGVEQEPAKWVPTTEAFVARWKAGGQAVAMMGPGTYDRLTAQSVPMIVIARDARRVIVRRN
Sequences:
>Translated_556_residues MPIDRTAQAPSLPWRNASLWLLAAALLAVWLGTLGYRHLIPTDEGRYAEIAREMFVSGDWVTIRYNALKYFEKPPLQMWG TALAYTLFGIGDWQARLFTALSGIVGIVFTMLAAARWWGKRTAIISGLVLVSAPLWNVGSHFNSLDMGVAGCMTMALGAL LLAQHPDATRAQQRGWMWACWASMALAVLSKGLIGVVLPGFVLVVYTLIARDWALWKRLHLLTGLIVFFAVGAPWFVLIS MRNPEFAWFFFVHEHFQRFTSTVHNRNAPLWYFVPLLVAGFLPWLAQLPGAARLTMARAETASNGFRPTLVLGLWAVLIF AFFSISDSKLPGYIFPIIPALAILAALVLEHTSEPAWRWQLKAFLALALVGLAASGYVATMSSEMYPNAVFSRFAMFLVV AFVAGAGLTWLALRLADRRFESVAAFACAWFLTFTAAMLGHEAFGRSMSGIDLVPAVKAWLKPDVPFYAVERLDHTMPFY LGRAIIMVQEPDELAFGVEQEPAKWVPTTEAFVARWKAGGQAVAMMGPGTYDRLTAQSVPMIVIARDARRVIVRRN >Mature_555_residues PIDRTAQAPSLPWRNASLWLLAAALLAVWLGTLGYRHLIPTDEGRYAEIAREMFVSGDWVTIRYNALKYFEKPPLQMWGT ALAYTLFGIGDWQARLFTALSGIVGIVFTMLAAARWWGKRTAIISGLVLVSAPLWNVGSHFNSLDMGVAGCMTMALGALL LAQHPDATRAQQRGWMWACWASMALAVLSKGLIGVVLPGFVLVVYTLIARDWALWKRLHLLTGLIVFFAVGAPWFVLISM RNPEFAWFFFVHEHFQRFTSTVHNRNAPLWYFVPLLVAGFLPWLAQLPGAARLTMARAETASNGFRPTLVLGLWAVLIFA FFSISDSKLPGYIFPIIPALAILAALVLEHTSEPAWRWQLKAFLALALVGLAASGYVATMSSEMYPNAVFSRFAMFLVVA FVAGAGLTWLALRLADRRFESVAAFACAWFLTFTAAMLGHEAFGRSMSGIDLVPAVKAWLKPDVPFYAVERLDHTMPFYL GRAIIMVQEPDELAFGVEQEPAKWVPTTEAFVARWKAGGQAVAMMGPGTYDRLTAQSVPMIVIARDARRVIVRRN
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=336, Percent_Identity=31.25, Blast_Score=132, Evalue=5e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 61697; Mature: 61566
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIDRTAQAPSLPWRNASLWLLAAALLAVWLGTLGYRHLIPTDEGRYAEIAREMFVSGDW CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCE VTIRYNALKYFEKPPLQMWGTALAYTLFGIGDWQARLFTALSGIVGIVFTMLAAARWWGK EEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RTAIISGLVLVSAPLWNVGSHFNSLDMGVAGCMTMALGALLLAQHPDATRAQQRGWMWAC HHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHH WASMALAVLSKGLIGVVLPGFVLVVYTLIARDWALWKRLHLLTGLIVFFAVGAPWFVLIS HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE MRNPEFAWFFFVHEHFQRFTSTVHNRNAPLWYFVPLLVAGFLPWLAQLPGAARLTMARAE ECCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH TASNGFRPTLVLGLWAVLIFAFFSISDSKLPGYIFPIIPALAILAALVLEHTSEPAWRWQ HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH LKAFLALALVGLAASGYVATMSSEMYPNAVFSRFAMFLVVAFVAGAGLTWLALRLADRRF HHHHHHHHHHHHHCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ESVAAFACAWFLTFTAAMLGHEAFGRSMSGIDLVPAVKAWLKPDVPFYAVERLDHTMPFY HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCHHH LGRAIIMVQEPDELAFGVEQEPAKWVPTTEAFVARWKAGGQAVAMMGPGTYDRLTAQSVP HCCEEEEEECCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCC MIVIARDARRVIVRRN EEEEECCCCEEEEECC >Mature Secondary Structure PIDRTAQAPSLPWRNASLWLLAAALLAVWLGTLGYRHLIPTDEGRYAEIAREMFVSGDW CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCE VTIRYNALKYFEKPPLQMWGTALAYTLFGIGDWQARLFTALSGIVGIVFTMLAAARWWGK EEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RTAIISGLVLVSAPLWNVGSHFNSLDMGVAGCMTMALGALLLAQHPDATRAQQRGWMWAC HHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHH WASMALAVLSKGLIGVVLPGFVLVVYTLIARDWALWKRLHLLTGLIVFFAVGAPWFVLIS HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE MRNPEFAWFFFVHEHFQRFTSTVHNRNAPLWYFVPLLVAGFLPWLAQLPGAARLTMARAE ECCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH TASNGFRPTLVLGLWAVLIFAFFSISDSKLPGYIFPIIPALAILAALVLEHTSEPAWRWQ HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH LKAFLALALVGLAASGYVATMSSEMYPNAVFSRFAMFLVVAFVAGAGLTWLALRLADRRF HHHHHHHHHHHHHCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ESVAAFACAWFLTFTAAMLGHEAFGRSMSGIDLVPAVKAWLKPDVPFYAVERLDHTMPFY HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCHHH LGRAIIMVQEPDELAFGVEQEPAKWVPTTEAFVARWKAGGQAVAMMGPGTYDRLTAQSVP HCCEEEEEECCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCC MIVIARDARRVIVRRN EEEEECCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA