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The map label for this gene is ydhO [H]

Identifier: 187928111

GI number: 187928111

Start: 1078277

End: 1078924

Strand: Direct

Name: ydhO [H]

Synonym: Rpic_1018

Alternate gene names: 187928111

Gene position: 1078277-1078924 (Clockwise)

Preceding gene: 187928110

Following gene: 187928112

Centisome position: 27.35

GC content: 61.57

Gene sequence:

>648_bases
ATGCAGCATTTCGTACTTCATTCCATGGCGCGCCTGGCGGTAGGGGTTGTGATCGGCTGCGGCGTGATGCTGTCGAATGC
AGTGCATGCTGATACGGTCTTCAAAGACACGGAAGTCCGCGCCGACGTCAAGCCCGAGGCCAAACCGGGCCTCATCTCAA
ACGTGATGAGCAAGACCGGCGACGTCGTCATGAACGCTCTGGGCATGATCGGGCTGCGCTACCGTTTCGGCGGCAACACG
CCGGAATCGGGCCTCGACTGCAGCGGCTTCGTCCGCTACGTCTTCAACGATACTTTCGGCTTCCTGCTGCCGCGTCGCGC
CGTGGAAATGAGCCGCGTTGGCACCAGCGTGGACACGGCGGAACTGCGTCCGGGCGATTTGGTGTTCTTCAACACCATGC
GCCACACGTTCTCGCACGTCGGCATCTATATCGGCGACAACAAATTCGTGCACGCTCCCTCCACCGGCAGCAAGATCCGC
GTGGATGACATGACCGCTTCGTACTGGGTGACACGCTACAACGGCGCCCGCCGCATCGAGGGCAAGTCCGGTGCCGCAAT
CAAGGACGGCGCCGACAACTTTGTCGAGCAACTCAAGCGTGTCGACCCGAATGCCGCCGGCAAGCCGCTGGCAATGTACG
GCGGTTGA

Upstream 100 bases:

>100_bases
CTTTTATCATCCTGCGAGATTGTTTTAACAAGATTCGGACTGTTCTCATTTGCGGCGGCGTATGTGCGCCGCATCATTAC
AAGTTTCCGAGGGAGAACCA

Downstream 100 bases:

>100_bases
TTCGCTCTGATGCGCATCACGCAATAGAAAAAAGCCACGCAGCTACGCGTGGCTTTTTTTTGTTCGCTGACCCGTCCTGA
ATAAGGTTGACACTTTTTCC

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MQHFVLHSMARLAVGVVIGCGVMLSNAVHADTVFKDTEVRADVKPEAKPGLISNVMSKTGDVVMNALGMIGLRYRFGGNT
PESGLDCSGFVRYVFNDTFGFLLPRRAVEMSRVGTSVDTAELRPGDLVFFNTMRHTFSHVGIYIGDNKFVHAPSTGSKIR
VDDMTASYWVTRYNGARRIEGKSGAAIKDGADNFVEQLKRVDPNAAGKPLAMYGG

Sequences:

>Translated_215_residues
MQHFVLHSMARLAVGVVIGCGVMLSNAVHADTVFKDTEVRADVKPEAKPGLISNVMSKTGDVVMNALGMIGLRYRFGGNT
PESGLDCSGFVRYVFNDTFGFLLPRRAVEMSRVGTSVDTAELRPGDLVFFNTMRHTFSHVGIYIGDNKFVHAPSTGSKIR
VDDMTASYWVTRYNGARRIEGKSGAAIKDGADNFVEQLKRVDPNAAGKPLAMYGG
>Mature_215_residues
MQHFVLHSMARLAVGVVIGCGVMLSNAVHADTVFKDTEVRADVKPEAKPGLISNVMSKTGDVVMNALGMIGLRYRFGGNT
PESGLDCSGFVRYVFNDTFGFLLPRRAVEMSRVGTSVDTAELRPGDLVFFNTMRHTFSHVGIYIGDNKFVHAPSTGSKIR
VDDMTASYWVTRYNGARRIEGKSGAAIKDGADNFVEQLKRVDPNAAGKPLAMYGG

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=128, Percent_Identity=42.96875, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1788501, Length=184, Percent_Identity=37.5, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1786421, Length=150, Percent_Identity=36, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=43.6363636363636, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 23354; Mature: 23354

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHFVLHSMARLAVGVVIGCGVMLSNAVHADTVFKDTEVRADVKPEAKPGLISNVMSKTG
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHH
DVVMNALGMIGLRYRFGGNTPESGLDCSGFVRYVFNDTFGFLLPRRAVEMSRVGTSVDTA
HHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCC
ELRPGDLVFFNTMRHTFSHVGIYIGDNKFVHAPSTGSKIRVDDMTASYWVTRYNGARRIE
CCCCCCEEEEHHHHHHHHHEEEEECCCEEEECCCCCCEEEEECCCCEEEEEECCCCEEEC
GKSGAAIKDGADNFVEQLKRVDPNAAGKPLAMYGG
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCC
>Mature Secondary Structure
MQHFVLHSMARLAVGVVIGCGVMLSNAVHADTVFKDTEVRADVKPEAKPGLISNVMSKTG
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHH
DVVMNALGMIGLRYRFGGNTPESGLDCSGFVRYVFNDTFGFLLPRRAVEMSRVGTSVDTA
HHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCC
ELRPGDLVFFNTMRHTFSHVGIYIGDNKFVHAPSTGSKIRVDDMTASYWVTRYNGARRIE
CCCCCCEEEEHHHHHHHHHEEEEECCCEEEECCCCCCEEEEECCCCEEEEEECCCCEEEC
GKSGAAIKDGADNFVEQLKRVDPNAAGKPLAMYGG
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]