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The map label for this gene is ycfD [H]

Identifier: 187928083

GI number: 187928083

Start: 1045864

End: 1046991

Strand: Reverse

Name: ycfD [H]

Synonym: Rpic_0990

Alternate gene names: 187928083

Gene position: 1046991-1045864 (Counterclockwise)

Preceding gene: 187928085

Following gene: 187928074

Centisome position: 26.56

GC content: 64.98

Gene sequence:

>1128_bases
ATGCGCACGCACTGGCAGAAGAAGCCTCTGCTGATCCGGCAGGCACTCTCCCCCGAAGAGATGCGTGCGCTGCACTTTCC
GCTCTCGCCTGAACGTGTACTTGCCCTGGCTGCGCGCCCCGATGTCGAGTCCCGCTTGATCGCGCAATCGCGCGGGCGCT
GGTCGTTCAATCACGGCCCCTTCGACGAACGCCCGCTGCCCTCGCGCAAGACACGCAACTGGTCGGTGCTTGTGCAGGGC
GCGAACCTCGTCGAGCCGGCGGTCGAAGCGTTGATGCAGCGTTTCCGGTTCATTCCCGACGCGCGGCTCGATGACGTGAT
GATCAGCTTCGCAACCGACGGCGGCGGCGTCGGCCCGCACTTCGATTCGTACGATGTGTTCCTGCTGCAGGCCCACGGCA
GGCGCCGCTGGCGCATCTCAGCCCAGGACGATCTCACGCTCGTCCCCGATCTGCCGCTCAAGATCCTCGCCAACTTCCAG
CCCGAAGAGGAATTCGTACTAGAGCCCGGCGACATGCTGTATCTGCCGCCGCACTACGCACATGACGGCGTGGCCGAGGG
CGACTGCATGACGTATTCGATCGGCTTCCGCTCACCGTCGTACCGCGAACTGGCCGGCCACTTCCTGGGCTTCCTGTCGC
AAACGCTGGAAGACGACCCCAACTTCGACGGCCGCTACGCCGATCCCGAACAGAAGCCCACCACCCACCCCGGCGAACTG
CCGGCCGCCATGGTCAAGGCCCTTGTCCAGAAGCTCAACGCGTTGCGCTGGACGCCTGAACTCGTCGGTGAATTCCTCGG
CGCGTACCTTTCCGAACCCAAGGATCACGTCGACTTCGTCACGCAGCCCCGCTTGCCGCTTGCCCGCTTCACGGCTCGGG
CGCGCAAGGAAGGCATCGTGCTGGACGCGCGCACGCAGGCGCTGTATGACGCGCAACGCTTCTGGATCAACGGCGATACG
TTTGAACCATCGGGAACGCTGCTTGCGTGGCTCTCCGCGTTGGCGGACGCACGTCGTGCGAGCGCTGCATCCGTGGATGC
GGCGGCCGGCTTGCCAGATCTGATGGATACGCTGCACGCTTGGTACGAAGAAGGCTGGCTCAGGCTGGCTGGACCCGCGC
AACGATGA

Upstream 100 bases:

>100_bases
GAACGAAGTCCCATTATACGCTGCCGATGGCGGCGTCCAACCTGCTCTTCCAGCGGGGCATCCGGCGCAACTCCTCGGCG
GGCTGTCACCGCGCGATTTC

Downstream 100 bases:

>100_bases
TTCCGCATTGAAACAGATCGTTACAAAAGCGTCTGAATCGCACGTGCGTCAGCCCCGACTCAGCTACACACAGTAGGTAA
AGGCCGCTATAATCCGACGC

Product: Cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MRTHWQKKPLLIRQALSPEEMRALHFPLSPERVLALAARPDVESRLIAQSRGRWSFNHGPFDERPLPSRKTRNWSVLVQG
ANLVEPAVEALMQRFRFIPDARLDDVMISFATDGGGVGPHFDSYDVFLLQAHGRRRWRISAQDDLTLVPDLPLKILANFQ
PEEEFVLEPGDMLYLPPHYAHDGVAEGDCMTYSIGFRSPSYRELAGHFLGFLSQTLEDDPNFDGRYADPEQKPTTHPGEL
PAAMVKALVQKLNALRWTPELVGEFLGAYLSEPKDHVDFVTQPRLPLARFTARARKEGIVLDARTQALYDAQRFWINGDT
FEPSGTLLAWLSALADARRASAASVDAAAGLPDLMDTLHAWYEEGWLRLAGPAQR

Sequences:

>Translated_375_residues
MRTHWQKKPLLIRQALSPEEMRALHFPLSPERVLALAARPDVESRLIAQSRGRWSFNHGPFDERPLPSRKTRNWSVLVQG
ANLVEPAVEALMQRFRFIPDARLDDVMISFATDGGGVGPHFDSYDVFLLQAHGRRRWRISAQDDLTLVPDLPLKILANFQ
PEEEFVLEPGDMLYLPPHYAHDGVAEGDCMTYSIGFRSPSYRELAGHFLGFLSQTLEDDPNFDGRYADPEQKPTTHPGEL
PAAMVKALVQKLNALRWTPELVGEFLGAYLSEPKDHVDFVTQPRLPLARFTARARKEGIVLDARTQALYDAQRFWINGDT
FEPSGTLLAWLSALADARRASAASVDAAAGLPDLMDTLHAWYEEGWLRLAGPAQR
>Mature_375_residues
MRTHWQKKPLLIRQALSPEEMRALHFPLSPERVLALAARPDVESRLIAQSRGRWSFNHGPFDERPLPSRKTRNWSVLVQG
ANLVEPAVEALMQRFRFIPDARLDDVMISFATDGGGVGPHFDSYDVFLLQAHGRRRWRISAQDDLTLVPDLPLKILANFQ
PEEEFVLEPGDMLYLPPHYAHDGVAEGDCMTYSIGFRSPSYRELAGHFLGFLSQTLEDDPNFDGRYADPEQKPTTHPGEL
PAAMVKALVQKLNALRWTPELVGEFLGAYLSEPKDHVDFVTQPRLPLARFTARARKEGIVLDARTQALYDAQRFWINGDT
FEPSGTLLAWLSALADARRASAASVDAAAGLPDLMDTLHAWYEEGWLRLAGPAQR

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=376, Percent_Identity=32.7127659574468, Blast_Score=192, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42229; Mature: 42229

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTHWQKKPLLIRQALSPEEMRALHFPLSPERVLALAARPDVESRLIAQSRGRWSFNHGP
CCCCCCCCCHHHHHCCCHHHHHHEECCCCHHHHEEEECCCCHHHHHHHHCCCCCCCCCCC
FDERPLPSRKTRNWSVLVQGANLVEPAVEALMQRFRFIPDARLDDVMISFATDGGGVGPH
CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC
FDSYDVFLLQAHGRRRWRISAQDDLTLVPDLPLKILANFQPEEEFVLEPGDMLYLPPHYA
CCCCEEEEEEECCCEEEEECCCCCEEECCCCCHHHHCCCCCCHHEEECCCCEEEECCCCC
HDGVAEGDCMTYSIGFRSPSYRELAGHFLGFLSQTLEDDPNFDGRYADPEQKPTTHPGEL
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PAAMVKALVQKLNALRWTPELVGEFLGAYLSEPKDHVDFVTQPRLPLARFTARARKEGIV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHCCEE
LDARTQALYDAQRFWINGDTFEPSGTLLAWLSALADARRASAASVDAAAGLPDLMDTLHA
EECHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHH
WYEEGWLRLAGPAQR
HHHCCCEEECCCCCC
>Mature Secondary Structure
MRTHWQKKPLLIRQALSPEEMRALHFPLSPERVLALAARPDVESRLIAQSRGRWSFNHGP
CCCCCCCCCHHHHHCCCHHHHHHEECCCCHHHHEEEECCCCHHHHHHHHCCCCCCCCCCC
FDERPLPSRKTRNWSVLVQGANLVEPAVEALMQRFRFIPDARLDDVMISFATDGGGVGPH
CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC
FDSYDVFLLQAHGRRRWRISAQDDLTLVPDLPLKILANFQPEEEFVLEPGDMLYLPPHYA
CCCCEEEEEEECCCEEEEECCCCCEEECCCCCHHHHCCCCCCHHEEECCCCEEEECCCCC
HDGVAEGDCMTYSIGFRSPSYRELAGHFLGFLSQTLEDDPNFDGRYADPEQKPTTHPGEL
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PAAMVKALVQKLNALRWTPELVGEFLGAYLSEPKDHVDFVTQPRLPLARFTARARKEGIV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHCCEE
LDARTQALYDAQRFWINGDTFEPSGTLLAWLSALADARRASAASVDAAAGLPDLMDTLHA
EECHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHH
WYEEGWLRLAGPAQR
HHHCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]