Click here to switch to the map view.

The map label for this gene is lutC [H]

Identifier: 187927992

GI number: 187927992

Start: 950098

End: 950817

Strand: Direct

Name: lutC [H]

Synonym: Rpic_0897

Alternate gene names: 187927992

Gene position: 950098-950817 (Clockwise)

Preceding gene: 187927991

Following gene: 187927993

Centisome position: 24.1

GC content: 67.5

Gene sequence:

>720_bases
ATGGAATCACAACCGGACACCCCCGTCGACCCGCTCGACACCAGCCGCGCACGCGACGCCATCTTTGCGCGCATCCGCAA
TGCGCAGCATCGTCCCGCGAAACCGACGCAGGGTGAGCGCGATGCCGTGGCGGATTACCTCGCGCGCCACCCCGCCGGCC
CGCGCCCGCCGGTGCCGGAAAACCTTGCCGCGCATTTTGCCGAGCAGGCGCTGAAGATGGCTTCCACGCTGGATACCGTG
GAGGCGCTGTCCGACGTGCCGGGCGCGGTGGCCCGTTACTTGTCTGGGCTGAACCTCCGGCCGCAGGCCGTGGCCTGGAC
TACGTTGGAATCGCTGGACTGGGCCGCTGCTGGCATCGGCATCGAATTCCGTCCGCCGGTGCGCGAGGCGCAAGCCGATC
AGGAGCACGGCGATCTCGTCGGCATTACGGGTTGCTTCTGCGCGATTGCTGAGACGGGCTCGCTGATGCTGCTGTCGGGG
CCGGAGAACGTCGCTTCCACGGCGCTGCTGCCCGAGACGCATATCGCCGTGGTTCCGCAGTCGCGCATCGTCGCCAATCT
GGAAGATGCCTATTCGCTGATGCGCGCGGAGCGAGGCGAGCTGCCACGCGCCACCAACGTCATCAGCGGGCCGTCGCGCA
CGGGGGATATCGAGCAGACCATCGTGCTCGGCGCACATGGCCCGTATCGGGTGCATGTGATCGTGGTGTCGACTGCCTGA

Upstream 100 bases:

>100_bases
GCGTGCAATAAGGCTCACGCCGACGCCGAATAAGTTTCAACGGCGGGGGCGGATCGTGCAGGAAGCGGCTCGTATAATCG
ATCGATCTTTCGGAGCCGCC

Downstream 100 bases:

>100_bases
GACAGCGTCCAGGGCTCATTCGCTCATCAAACATCGGAGGACGTTCAGGGCGACAGACCTCGGGCGTTTACACTGGCGTC
TTTGTTCGTGTGGCGAGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MESQPDTPVDPLDTSRARDAIFARIRNAQHRPAKPTQGERDAVADYLARHPAGPRPPVPENLAAHFAEQALKMASTLDTV
EALSDVPGAVARYLSGLNLRPQAVAWTTLESLDWAAAGIGIEFRPPVREAQADQEHGDLVGITGCFCAIAETGSLMLLSG
PENVASTALLPETHIAVVPQSRIVANLEDAYSLMRAERGELPRATNVISGPSRTGDIEQTIVLGAHGPYRVHVIVVSTA

Sequences:

>Translated_239_residues
MESQPDTPVDPLDTSRARDAIFARIRNAQHRPAKPTQGERDAVADYLARHPAGPRPPVPENLAAHFAEQALKMASTLDTV
EALSDVPGAVARYLSGLNLRPQAVAWTTLESLDWAAAGIGIEFRPPVREAQADQEHGDLVGITGCFCAIAETGSLMLLSG
PENVASTALLPETHIAVVPQSRIVANLEDAYSLMRAERGELPRATNVISGPSRTGDIEQTIVLGAHGPYRVHVIVVSTA
>Mature_239_residues
MESQPDTPVDPLDTSRARDAIFARIRNAQHRPAKPTQGERDAVADYLARHPAGPRPPVPENLAAHFAEQALKMASTLDTV
EALSDVPGAVARYLSGLNLRPQAVAWTTLESLDWAAAGIGIEFRPPVREAQADQEHGDLVGITGCFCAIAETGSLMLLSG
PENVASTALLPETHIAVVPQSRIVANLEDAYSLMRAERGELPRATNVISGPSRTGDIEQTIVLGAHGPYRVHVIVVSTA

Specific function: Is essential for L-lactate degradation and allows cells to grow with lactate as the sole carbon source. May also allow cells to utilize an alternative carbon source during biofilm formation, since it contributes to the formation of architecturally complex

COG id: COG1556

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lutC/ykgG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003741
- InterPro:   IPR002698
- InterPro:   IPR022823 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 25487; Mature: 25487

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00191 CYTOCHROME_B5_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESQPDTPVDPLDTSRARDAIFARIRNAQHRPAKPTQGERDAVADYLARHPAGPRPPVPE
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCH
NLAAHFAEQALKMASTLDTVEALSDVPGAVARYLSGLNLRPQAVAWTTLESLDWAAAGIG
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCC
IEFRPPVREAQADQEHGDLVGITGCFCAIAETGSLMLLSGPENVASTALLPETHIAVVPQ
CCCCCCHHHHHCCHHCCCEEEHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCEEEECCC
SRIVANLEDAYSLMRAERGELPRATNVISGPSRTGDIEQTIVLGAHGPYRVHVIVVSTA
HHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECC
>Mature Secondary Structure
MESQPDTPVDPLDTSRARDAIFARIRNAQHRPAKPTQGERDAVADYLARHPAGPRPPVPE
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCH
NLAAHFAEQALKMASTLDTVEALSDVPGAVARYLSGLNLRPQAVAWTTLESLDWAAAGIG
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCC
IEFRPPVREAQADQEHGDLVGITGCFCAIAETGSLMLLSGPENVASTALLPETHIAVVPQ
CCCCCCHHHHHCCHHCCCEEEHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCEEEECCC
SRIVANLEDAYSLMRAERGELPRATNVISGPSRTGDIEQTIVLGAHGPYRVHVIVVSTA
HHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]