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The map label for this gene is rbsC [H]

Identifier: 187927975

GI number: 187927975

Start: 934111

End: 935118

Strand: Reverse

Name: rbsC [H]

Synonym: Rpic_0880

Alternate gene names: 187927975

Gene position: 935118-934111 (Counterclockwise)

Preceding gene: 187927976

Following gene: 187927974

Centisome position: 23.72

GC content: 66.57

Gene sequence:

>1008_bases
ATGCGCTCTGATTCCACCCTGCCCCCGACGCCGCCCGCTGCAACAGCCGGCACGCGCGCGGCGCTGGGCATGTCGCTTGG
CACCATCGGCGGGTTGCTCGCTGCGCTGGTCGCCATGCTGGTGCTGTTCGGCACGCTGTCGCCAACGTTCTTCTCGCTGC
CCACGTTCACAACCATCGCCAACGAGATTCCCGACCTGCTCGTGATGGCGGTGGGCATGACATTCATCCTGATGATCGGC
GGCATTGATCTGTCGGTGGGCTCGGTGCTGGCGCTGTCGGCTTCGGTGCTGTCGGTGGCCATGACCCAGTTGGGTTGGGG
CTTGTTGCCGGCTGCGCTGGCGGGCGTGGTGCTGGCCACGGCGGCCGGCATGCTGACCGGCGCAGTCACGGTGCACTGGG
GCATTCCGTCGTTCATCGTGTCACTGGGCGTGCTGGAAATGGCGCGCGGCCTCGCCTACAGCCTCACCGATTCGCGCACG
GTGTACATCGGCAGCGCGGTCGACTGGCTAGCCAACCCCATCGCGCTGGGCATCGCGCCGTCGTTCCTGATTGCGATTGC
CATCACGGTGGTTGGCCAGATCGTGCTGGTGCGCACGGTGTTTGGCCGCTACCTGGTGGCCATCGGCACCAACGAAGAAG
CTGTGCGGCTGGCGGGCGTGAACCCCCGCCCATACAAGATTGCGGTGTTCGCGCTGATGGGGCTGCTCTCCGGCCTGGCT
GCGCTGTTCCAGGTGTCGCGCCTGGAAGCCGCCGATCCGAACGCCGGCGTGGGCATGGAGCTGCAGGTGATCGCGGCCGT
GGTGATCGGCGGCACGAGCCTGATGGGTGGGCGCGGCTCGGTCGTGCGCACGCTGTTCGGCGTGCTCATCATCTCGGTGC
TCGAATCGGGCCTTGCGCAGATCGGCGCCTCCGAGCCCACCAAACGCATCATCACGGGCGCGGTCATCGTCGCAGCCGTG
GTCATGGATACCTATCGCAGCAAGCGCAACCGCAGCAAACACCATTAA

Upstream 100 bases:

>100_bases
CAACGCGGTGGCTGGAGCCAGGACGCCTTGCTCGCCGCTGCCTTCGGTGAATCGGAAGAATCCGATTCATATGCACCTCA
ATCACCCTCGGAGACCGCCG

Downstream 100 bases:

>100_bases
GAGACCGAGGAGATCGTCATGGCAACCATCAAAGACGTGGCCGCACTGGCCGGAGTTTCGTTCACCACCGTCTCGCACGT
CATCAACAACACACGACCGG

Product: Monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MRSDSTLPPTPPAATAGTRAALGMSLGTIGGLLAALVAMLVLFGTLSPTFFSLPTFTTIANEIPDLLVMAVGMTFILMIG
GIDLSVGSVLALSASVLSVAMTQLGWGLLPAALAGVVLATAAGMLTGAVTVHWGIPSFIVSLGVLEMARGLAYSLTDSRT
VYIGSAVDWLANPIALGIAPSFLIAIAITVVGQIVLVRTVFGRYLVAIGTNEEAVRLAGVNPRPYKIAVFALMGLLSGLA
ALFQVSRLEAADPNAGVGMELQVIAAVVIGGTSLMGGRGSVVRTLFGVLIISVLESGLAQIGASEPTKRIITGAVIVAAV
VMDTYRSKRNRSKHH

Sequences:

>Translated_335_residues
MRSDSTLPPTPPAATAGTRAALGMSLGTIGGLLAALVAMLVLFGTLSPTFFSLPTFTTIANEIPDLLVMAVGMTFILMIG
GIDLSVGSVLALSASVLSVAMTQLGWGLLPAALAGVVLATAAGMLTGAVTVHWGIPSFIVSLGVLEMARGLAYSLTDSRT
VYIGSAVDWLANPIALGIAPSFLIAIAITVVGQIVLVRTVFGRYLVAIGTNEEAVRLAGVNPRPYKIAVFALMGLLSGLA
ALFQVSRLEAADPNAGVGMELQVIAAVVIGGTSLMGGRGSVVRTLFGVLIISVLESGLAQIGASEPTKRIITGAVIVAAV
VMDTYRSKRNRSKHH
>Mature_335_residues
MRSDSTLPPTPPAATAGTRAALGMSLGTIGGLLAALVAMLVLFGTLSPTFFSLPTFTTIANEIPDLLVMAVGMTFILMIG
GIDLSVGSVLALSASVLSVAMTQLGWGLLPAALAGVVLATAAGMLTGAVTVHWGIPSFIVSLGVLEMARGLAYSLTDSRT
VYIGSAVDWLANPIALGIAPSFLIAIAITVVGQIVLVRTVFGRYLVAIGTNEEAVRLAGVNPRPYKIAVFALMGLLSGLA
ALFQVSRLEAADPNAGVGMELQVIAAVVIGGTSLMGGRGSVVRTLFGVLIISVLESGLAQIGASEPTKRIITGAVIVAAV
VMDTYRSKRNRSKHH

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=37.2093023255814, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1788896, Length=329, Percent_Identity=31.306990881459, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI145693152, Length=322, Percent_Identity=33.8509316770186, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1790524, Length=304, Percent_Identity=32.5657894736842, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789992, Length=139, Percent_Identity=43.8848920863309, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87082395, Length=259, Percent_Identity=34.7490347490347, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI145693214, Length=242, Percent_Identity=32.2314049586777, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1787793, Length=297, Percent_Identity=28.2828282828283, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787794, Length=310, Percent_Identity=27.0967741935484, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=28.1345565749235, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34307; Mature: 34307

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSDSTLPPTPPAATAGTRAALGMSLGTIGGLLAALVAMLVLFGTLSPTFFSLPTFTTIA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHH
NEIPDLLVMAVGMTFILMIGGIDLSVGSVLALSASVLSVAMTQLGWGLLPAALAGVVLAT
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
AAGMLTGAVTVHWGIPSFIVSLGVLEMARGLAYSLTDSRTVYIGSAVDWLANPIALGIAP
HHHHHHHHEEEECCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCHHHHHHCHHHHHHHH
SFLIAIAITVVGQIVLVRTVFGRYLVAIGTNEEAVRLAGVNPRPYKIAVFALMGLLSGLA
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
ALFQVSRLEAADPNAGVGMELQVIAAVVIGGTSLMGGRGSVVRTLFGVLIISVLESGLAQ
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IGASEPTKRIITGAVIVAAVVMDTYRSKRNRSKHH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRSDSTLPPTPPAATAGTRAALGMSLGTIGGLLAALVAMLVLFGTLSPTFFSLPTFTTIA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHH
NEIPDLLVMAVGMTFILMIGGIDLSVGSVLALSASVLSVAMTQLGWGLLPAALAGVVLAT
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
AAGMLTGAVTVHWGIPSFIVSLGVLEMARGLAYSLTDSRTVYIGSAVDWLANPIALGIAP
HHHHHHHHEEEECCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCHHHHHHCHHHHHHHH
SFLIAIAITVVGQIVLVRTVFGRYLVAIGTNEEAVRLAGVNPRPYKIAVFALMGLLSGLA
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
ALFQVSRLEAADPNAGVGMELQVIAAVVIGGTSLMGGRGSVVRTLFGVLIISVLESGLAQ
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IGASEPTKRIITGAVIVAAVVMDTYRSKRNRSKHH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]