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The map label for this gene is rnfB [H]

Identifier: 187927967

GI number: 187927967

Start: 922956

End: 923786

Strand: Reverse

Name: rnfB [H]

Synonym: Rpic_0872

Alternate gene names: 187927967

Gene position: 923786-922956 (Counterclockwise)

Preceding gene: 187927969

Following gene: 187927966

Centisome position: 23.43

GC content: 67.15

Gene sequence:

>831_bases
GTGGTTTCCTTGGTCCCCGCAGTGGCCGCATCCTTGGCCGACCGGCTCGAAAACCTCTTGCCGCAAACGCAATGCACCAA
GTGCGGCTACAACGGCTGCCGCCCCTACGGTGAAGCCATGGCCAGCGGCGAGGCGCTACCCAACCGCTGCCCACCCGGCG
GCGCGGAAGGCATTCGCCGGCTGTCCGACGCACTTGGCTGCACGGGTGACCTGCTCCCGCTGGACCCTTCCAACGGCATA
GAACAGCCTCGCGCCATCGCCGTCATCGACCCGGAACGCTGCATCGGTTGCACGCTGTGCATTCAGGCGTGCCCGGTCGA
CGCCATCGTGGGCGCGCCCAAGGCGATGCACACGGTGCTGGAGGACTGGTGCACCGGTTGCGACCTCTGCGTGCCCCCCT
GCCCTGTCGATTGCATCGACATGATCCCCATCACCGGCGAACGCACGGGCTGGGATGCCTGGAGCCAGCAACAGGCCGAT
GTCGCGCGGGACCGCTACGTCTTCCGCAACGCGCGCCTCAAGCGCGAACAAGCCGAGAACGAAGCGCGCCTCGCCGCCAA
GGCAGCGGCCAAACTCGCTGCCCTCAGCGCTGAACAACCGGCCGATGAGGCTGAGCTTGCCGCGCAGGCGCGCAAGAAGG
CGATCATCCAAGCGGCCATTGAACGGGCGCGCCAGAAGCAGGCCGAGATGGCTGCGCGCGGGCAAGGCCCGCGCAACGTG
ACCGACGTATCGGCGGATGTGCAAGCCCAGATTGACGAGGCTGAAGCCCGCCGCAAGCGCATCGCCAGCCAGATCGAACA
CAGCGCCAAACCCGACGCAGAAAAACCCTGA

Upstream 100 bases:

>100_bases
GGTCAAGACATGCCCGCCGTATGCGATGTCAGGGCATGCACGCCTTGCGCGGGGGCCAAATCGGCGATAATGACAGACTA
TTCAAACGACAAGTCCCATC

Downstream 100 bases:

>100_bases
CCCCTGCCCCGACGATGAATTCCGCCAAGCGCCACGCCATCTTCGAGACACTGCGCGAAAACAACCCGACGCCGACCACC
GAGCTGGAATACACCACGCC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MVSLVPAVAASLADRLENLLPQTQCTKCGYNGCRPYGEAMASGEALPNRCPPGGAEGIRRLSDALGCTGDLLPLDPSNGI
EQPRAIAVIDPERCIGCTLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCIDMIPITGERTGWDAWSQQQAD
VARDRYVFRNARLKREQAENEARLAAKAAAKLAALSAEQPADEAELAAQARKKAIIQAAIERARQKQAEMAARGQGPRNV
TDVSADVQAQIDEAEARRKRIASQIEHSAKPDAEKP

Sequences:

>Translated_276_residues
MVSLVPAVAASLADRLENLLPQTQCTKCGYNGCRPYGEAMASGEALPNRCPPGGAEGIRRLSDALGCTGDLLPLDPSNGI
EQPRAIAVIDPERCIGCTLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCIDMIPITGERTGWDAWSQQQAD
VARDRYVFRNARLKREQAENEARLAAKAAAKLAALSAEQPADEAELAAQARKKAIIQAAIERARQKQAEMAARGQGPRNV
TDVSADVQAQIDEAEARRKRIASQIEHSAKPDAEKP
>Mature_276_residues
MVSLVPAVAASLADRLENLLPQTQCTKCGYNGCRPYGEAMASGEALPNRCPPGGAEGIRRLSDALGCTGDLLPLDPSNGI
EQPRAIAVIDPERCIGCTLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCIDMIPITGERTGWDAWSQQQAD
VARDRYVFRNARLKREQAENEARLAAKAAAKLAALSAEQPADEAELAAQARKKAIIQAAIERARQKQAEMAARGQGPRNV
TDVSADVQAQIDEAEARRKRIASQIEHSAKPDAEKP

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=144, Percent_Identity=49.3055555555556, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 29518; Mature: 29518

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLVPAVAASLADRLENLLPQTQCTKCGYNGCRPYGEAMASGEALPNRCPPGGAEGIRR
CCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHH
LSDALGCTGDLLPLDPSNGIEQPRAIAVIDPERCIGCTLCIQACPVDAIVGAPKAMHTVL
HHHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCHHHHHCCHHHHHHHH
EDWCTGCDLCVPPCPVDCIDMIPITGERTGWDAWSQQQADVARDRYVFRNARLKREQAEN
HHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EARLAAKAAAKLAALSAEQPADEAELAAQARKKAIIQAAIERARQKQAEMAARGQGPRNV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TDVSADVQAQIDEAEARRKRIASQIEHSAKPDAEKP
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVSLVPAVAASLADRLENLLPQTQCTKCGYNGCRPYGEAMASGEALPNRCPPGGAEGIRR
CCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHH
LSDALGCTGDLLPLDPSNGIEQPRAIAVIDPERCIGCTLCIQACPVDAIVGAPKAMHTVL
HHHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCHHHHHCCHHHHHHHH
EDWCTGCDLCVPPCPVDCIDMIPITGERTGWDAWSQQQADVARDRYVFRNARLKREQAEN
HHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EARLAAKAAAKLAALSAEQPADEAELAAQARKKAIIQAAIERARQKQAEMAARGQGPRNV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TDVSADVQAQIDEAEARRKRIASQIEHSAKPDAEKP
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA