Click here to switch to the map view.

The map label for this gene is ydcR [H]

Identifier: 187927945

GI number: 187927945

Start: 902100

End: 903578

Strand: Direct

Name: ydcR [H]

Synonym: Rpic_0850

Alternate gene names: 187927945

Gene position: 902100-903578 (Clockwise)

Preceding gene: 187927937

Following gene: 187927946

Centisome position: 22.88

GC content: 67.48

Gene sequence:

>1479_bases
ATGAATCCCACCTCCCACATCATCAGCCTGGATGCCCGCCGCGCGGCCGCCCGCCCGGCGGCGGAGCAGTTGCCCGATCC
GATTCCGTCGGCGCAGATGACGCTGGTGGATCAGCTCACCGAGTGGGCGCGCATGCGCATTGACGAGCGCGTGTTTCGCG
CGGGCATGCGCATGCCGTCGATCCGGCAACTGGCGCAGGAGAAGAGCATTTCGCGCTTCACCGTGGTGGAGGCGTACGAG
CGGCTGGTGGCGCAGGGATATCTGGAATCGCGGCGCGGTTCGGGTTTCTACGTCAAGGAGCGCCAGGCGCCGCTGCCCGA
AGAGCCCGTCGCGCCGCTGCCAACCGCCGCGCGCAAGATCGACGTGACGTGGCTGCTGCGGAACATGTTCCATTCTGCCG
AGCCGCGCAAGGCGCCGGGCATCGGCTTTCTGCCCAACGGCTGGCTCGACGGCGAGTTGATCGCCAACGCGCTGCGCACG
CTCGGCCGGCAGAACGGCAACCAGTTTCTGGCGTGGGGATCGCCGCAGGGCTTTTTGCCGCTGCGCCAGCAGTTGCAGAC
GCGGTTGGCGGAGCTGGAGATCGGCGCCCGGCCGGACCAGATCGTGATGACCTCGGGCATCACCTCGTCGCTGGACCTGA
TCGCGCGCCAGTACGTGCAGCCCGGCGATACGGTGCTGGTGGGCGACCCGGCGTGGTTCCTGATGTTCGGCCGCTTTGCC
GCGCAAGGGGCGCAGGTGATCGGCGTGCCCTACACCGCCGAGGGGCCCGACCTGGTGGCGCTGGAGGGGCTGGTGCAGGT
GCGCCGGCCCAAGCTGCTGATCATCAACTCGATCCTGCATAACCCGACCGGCACGTCGCTGTCGGCGGCCAAGGCGTTTC
AGTTGCTGCGGCTGGCCGAGCAGTACGGTTTCCTGATCGTCGAAGACGATATCTACGGCGATCTCGCCCCGCCCGGACAC
CCCGGCACGCGGTTGGCGAGCCTCGACCAACTGCGCCGCGTGATCTACCTGAGCAGCTTCTCCAAGACGCTCGCGGCCAA
CCTGCGTGTGGGGTTCATCGCCTGCCACCCCGAGCTGGCCAAGAACCTGGTCGACGGCAAACTGCTGACCGGCCTCGTCA
CGCCCGAGATCAACGAGCGCGTGCTCTACAAGATCCTCACTGAAGGCCACTACCGCAAGCATGTCGAACGCATACGCGCC
CGACTGGACCGCGCCCGCGACGGCGTGCAGCGCAGCCTCGAGCGCATGGGCCTGAAGCTGTTTGCGCAGCAGGGTGCGGG
CATGTTCCTCTGGGCCGATACCGGGCAGGACACCAACGCCATTGCCCGCGCCGGGCACGAACAGGGCTATGTGTTTGCGC
CGGGGAGCCTGTTTTCGCCGTCGCAGATGCCGTCGACGTGGATGCGCTTCAACATCGCAACCAGCGCCGATCCGGAGTTG
CTCCGGTTCCTGGCGGAGCAGCTCGATCGCGGGGCTTGA

Upstream 100 bases:

>100_bases
TTCTGACCTTGATCCTACCGAACTGCGTCTGTACAGTACCTGTACACTTTGTCGTGGCGCTTTCTGTACAGTTTTCGGCG
CGCTTGAAGCCTACCCCGTC

Downstream 100 bases:

>100_bases
AAACCGGGCGCCACGCCCTATCTAGCTTCACAAATTCATGCGGGCGCGCGCAAGGTGTAGCCCGCTTCTCTTTCCACTTT
CCAGATTTTCTATGCACACC

Product: GntR family transcriptional regulator with aminotransferase domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MNPTSHIISLDARRAAARPAAEQLPDPIPSAQMTLVDQLTEWARMRIDERVFRAGMRMPSIRQLAQEKSISRFTVVEAYE
RLVAQGYLESRRGSGFYVKERQAPLPEEPVAPLPTAARKIDVTWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIANALRT
LGRQNGNQFLAWGSPQGFLPLRQQLQTRLAELEIGARPDQIVMTSGITSSLDLIARQYVQPGDTVLVGDPAWFLMFGRFA
AQGAQVIGVPYTAEGPDLVALEGLVQVRRPKLLIINSILHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGDLAPPGH
PGTRLASLDQLRRVIYLSSFSKTLAANLRVGFIACHPELAKNLVDGKLLTGLVTPEINERVLYKILTEGHYRKHVERIRA
RLDRARDGVQRSLERMGLKLFAQQGAGMFLWADTGQDTNAIARAGHEQGYVFAPGSLFSPSQMPSTWMRFNIATSADPEL
LRFLAEQLDRGA

Sequences:

>Translated_492_residues
MNPTSHIISLDARRAAARPAAEQLPDPIPSAQMTLVDQLTEWARMRIDERVFRAGMRMPSIRQLAQEKSISRFTVVEAYE
RLVAQGYLESRRGSGFYVKERQAPLPEEPVAPLPTAARKIDVTWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIANALRT
LGRQNGNQFLAWGSPQGFLPLRQQLQTRLAELEIGARPDQIVMTSGITSSLDLIARQYVQPGDTVLVGDPAWFLMFGRFA
AQGAQVIGVPYTAEGPDLVALEGLVQVRRPKLLIINSILHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGDLAPPGH
PGTRLASLDQLRRVIYLSSFSKTLAANLRVGFIACHPELAKNLVDGKLLTGLVTPEINERVLYKILTEGHYRKHVERIRA
RLDRARDGVQRSLERMGLKLFAQQGAGMFLWADTGQDTNAIARAGHEQGYVFAPGSLFSPSQMPSTWMRFNIATSADPEL
LRFLAEQLDRGA
>Mature_492_residues
MNPTSHIISLDARRAAARPAAEQLPDPIPSAQMTLVDQLTEWARMRIDERVFRAGMRMPSIRQLAQEKSISRFTVVEAYE
RLVAQGYLESRRGSGFYVKERQAPLPEEPVAPLPTAARKIDVTWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIANALRT
LGRQNGNQFLAWGSPQGFLPLRQQLQTRLAELEIGARPDQIVMTSGITSSLDLIARQYVQPGDTVLVGDPAWFLMFGRFA
AQGAQVIGVPYTAEGPDLVALEGLVQVRRPKLLIINSILHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGDLAPPGH
PGTRLASLDQLRRVIYLSSFSKTLAANLRVGFIACHPELAKNLVDGKLLTGLVTPEINERVLYKILTEGHYRKHVERIRA
RLDRARDGVQRSLERMGLKLFAQQGAGMFLWADTGQDTNAIARAGHEQGYVFAPGSLFSPSQMPSTWMRFNIATSADPEL
LRFLAEQLDRGA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=324, Percent_Identity=27.4691358024691, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI33469970, Length=324, Percent_Identity=27.4691358024691, Blast_Score=94, Evalue=3e-19,
Organism=Escherichia coli, GI1787710, Length=448, Percent_Identity=28.125, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1790797, Length=460, Percent_Identity=27.3913043478261, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54575; Mature: 54575

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTSHIISLDARRAAARPAAEQLPDPIPSAQMTLVDQLTEWARMRIDERVFRAGMRMPS
CCCCCCEEEEHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
IRQLAQEKSISRFTVVEAYERLVAQGYLESRRGSGFYVKERQAPLPEEPVAPLPTAARKI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHH
DVTWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIANALRTLGRQNGNQFLAWGSPQGFLP
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
LRQQLQTRLAELEIGARPDQIVMTSGITSSLDLIARQYVQPGDTVLVGDPAWFLMFGRFA
HHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
AQGAQVIGVPYTAEGPDLVALEGLVQVRRPKLLIINSILHNPTGTSLSAAKAFQLLRLAE
HCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHHH
QYGFLIVEDDIYGDLAPPGHPGTRLASLDQLRRVIYLSSFSKTLAANLRVGFIACHPELA
HCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
KNLVDGKLLTGLVTPEINERVLYKILTEGHYRKHVERIRARLDRARDGVQRSLERMGLKL
HHHHCCHHHHEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAQQGAGMFLWADTGQDTNAIARAGHEQGYVFAPGSLFSPSQMPSTWMRFNIATSADPEL
HHHCCCCEEEEECCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCHHEEEEECCCCCHHH
LRFLAEQLDRGA
HHHHHHHHHCCC
>Mature Secondary Structure
MNPTSHIISLDARRAAARPAAEQLPDPIPSAQMTLVDQLTEWARMRIDERVFRAGMRMPS
CCCCCCEEEEHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
IRQLAQEKSISRFTVVEAYERLVAQGYLESRRGSGFYVKERQAPLPEEPVAPLPTAARKI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHH
DVTWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIANALRTLGRQNGNQFLAWGSPQGFLP
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
LRQQLQTRLAELEIGARPDQIVMTSGITSSLDLIARQYVQPGDTVLVGDPAWFLMFGRFA
HHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
AQGAQVIGVPYTAEGPDLVALEGLVQVRRPKLLIINSILHNPTGTSLSAAKAFQLLRLAE
HCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHHH
QYGFLIVEDDIYGDLAPPGHPGTRLASLDQLRRVIYLSSFSKTLAANLRVGFIACHPELA
HCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
KNLVDGKLLTGLVTPEINERVLYKILTEGHYRKHVERIRARLDRARDGVQRSLERMGLKL
HHHHCCHHHHEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAQQGAGMFLWADTGQDTNAIARAGHEQGYVFAPGSLFSPSQMPSTWMRFNIATSADPEL
HHHCCCCEEEEECCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCHHEEEEECCCCCHHH
LRFLAEQLDRGA
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]