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The map label for this gene is rimM [H]

Identifier: 187927900

GI number: 187927900

Start: 850870

End: 851424

Strand: Direct

Name: rimM [H]

Synonym: Rpic_0805

Alternate gene names: 187927900

Gene position: 850870-851424 (Clockwise)

Preceding gene: 187927899

Following gene: 187927901

Centisome position: 21.58

GC content: 63.78

Gene sequence:

>555_bases
ATGCGCCCGGGCACGGGCACCAACCCGACGCTCCCCGACGATCTCGTCGAGGTGGGTTATGTGGGTGGGGCCTACGGTAT
TCGCGGCTGGATCAAGGTCCAGTTGCACGGCGACGCCGACGCGCTGCTGAATGCCCGTACCTGGTGGCTCAAGCCGGCTG
CTGGCGCACTGGCAACGTCAGCGGACTGGCGGGTGTTTCCCGTTGGCACGTCGCGTGAGCATAGCGGCACGGTGGTGGCG
GGTTCGCCTGCCGCACCCGATCGCAATGTCGCCGAAGCTCTGCGCGGCTATGCCGTGTGGGTCAGCCGGGCCGATTTTCC
CGAGCCGGATGATGACGAGTTTTACTGGGTCGATCTGATCGGCGCTACGGTCGTCAACGAGCAACAGGAAACGCTTGGCA
CGGTGCGAGGCCTGATCGACAACGGTGCGCATCAAATCCTGCGTATCGTCGGTGAAGGTGAGGTCGAGCGGCTCGTGCCG
TTTGTCGAGGTTTACGTGAAGTCGGTGGATGTCGCAGGCAAGCGCATCGTCGTCGACTGGGGTCTGGATTACTGA

Upstream 100 bases:

>100_bases
AGTACTTCCTGCTGTGACGCGCGCCGCATCGACACGGCCCGGTCCTGTGGCTGCTGCAACGCAGGCAACCTCGCAAAAGG
TTGCCGAACGGCTGCAAGCC

Downstream 100 bases:

>100_bases
ACATGCGGCCGGAGAATTCGGCGATGCAGTTCGACGTCGTCTCGCTGTTTCCGGACATGTTCCGGGCGCTGACGGACTGG
GGTATCACCAGCCGCGCAGC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MRPGTGTNPTLPDDLVEVGYVGGAYGIRGWIKVQLHGDADALLNARTWWLKPAAGALATSADWRVFPVGTSREHSGTVVA
GSPAAPDRNVAEALRGYAVWVSRADFPEPDDDEFYWVDLIGATVVNEQQETLGTVRGLIDNGAHQILRIVGEGEVERLVP
FVEVYVKSVDVAGKRIVVDWGLDY

Sequences:

>Translated_184_residues
MRPGTGTNPTLPDDLVEVGYVGGAYGIRGWIKVQLHGDADALLNARTWWLKPAAGALATSADWRVFPVGTSREHSGTVVA
GSPAAPDRNVAEALRGYAVWVSRADFPEPDDDEFYWVDLIGATVVNEQQETLGTVRGLIDNGAHQILRIVGEGEVERLVP
FVEVYVKSVDVAGKRIVVDWGLDY
>Mature_184_residues
MRPGTGTNPTLPDDLVEVGYVGGAYGIRGWIKVQLHGDADALLNARTWWLKPAAGALATSADWRVFPVGTSREHSGTVVA
GSPAAPDRNVAEALRGYAVWVSRADFPEPDDDEFYWVDLIGATVVNEQQETLGTVRGLIDNGAHQILRIVGEGEVERLVP
FVEVYVKSVDVAGKRIVVDWGLDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=176, Percent_Identity=28.4090909090909, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19957; Mature: 19957

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPGTGTNPTLPDDLVEVGYVGGAYGIRGWIKVQLHGDADALLNARTWWLKPAAGALATS
CCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEECCHHHHHCCCEEEECCCCCCEECC
ADWRVFPVGTSREHSGTVVAGSPAAPDRNVAEALRGYAVWVSRADFPEPDDDEFYWVDLI
CCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEE
GATVVNEQQETLGTVRGLIDNGAHQILRIVGEGEVERLVPFVEVYVKSVDVAGKRIVVDW
CCHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
GLDY
CCCC
>Mature Secondary Structure
MRPGTGTNPTLPDDLVEVGYVGGAYGIRGWIKVQLHGDADALLNARTWWLKPAAGALATS
CCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEECCHHHHHCCCEEEECCCCCCEECC
ADWRVFPVGTSREHSGTVVAGSPAAPDRNVAEALRGYAVWVSRADFPEPDDDEFYWVDLI
CCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEE
GATVVNEQQETLGTVRGLIDNGAHQILRIVGEGEVERLVPFVEVYVKSVDVAGKRIVVDW
CCHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
GLDY
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]