| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is nudC [H]
Identifier: 187927851
GI number: 187927851
Start: 794772
End: 795353
Strand: Direct
Name: nudC [H]
Synonym: Rpic_0755
Alternate gene names: 187927851
Gene position: 794772-795353 (Clockwise)
Preceding gene: 187927850
Following gene: 187927852
Centisome position: 20.16
GC content: 63.4
Gene sequence:
>582_bases ATGAGCTTCGACTACCGTTTCTGTCCGCAATGCGCCACGCCGCTCGTCGAGCAGCACAATGCCGGTCGCCTGCGCATCGC GTGCCCGGGGCAGGACTGCGGCTTCGTGCATTGGAACAATCCGTTGCCCGTCCTGGCGGCGGTTGTCGAATATCGCGGGC AGATGTTCCTGGCGCGCAATGCACTGTGGCCGGAGGGCATGTTCGCGCTCGTCACGGGCTTTCTCGAACGCGACGAGACG CCCGAAGAGGGCATCGCCCGTGAGCTGAAGGAAGAGACGAACCTCGACGCTCAATCGATCTCGCTGATCGGCGTGTATGA GTTCATCCGCAAGAACGAACTGATCATCGCGTACCACGTGGTGGCCGATGGCGAGATCGCGCTGTCGGAAGAGTTGGTTG AATACCGCCTGAAGCCGTTCGAGAAAGTCCGCCCCTGGACGGCCGGCACTGGTTATGCCGTCGCCGATTTCCTGACCGCG CGCGGGCTGCCCGTCAGCTACATCGACATCCGTACCGGCGAACCGGCCGAGCCGCCGCCGCGCCAGTGGCAACCCACACG GCTCGTTACAATCCCGGAATGA
Upstream 100 bases:
>100_bases GCCTGATGTGCTCGTGGGACGTGCAACCGGAGACGGTGGAAGCCTTTGCCGCCGATATTCGCGCAGCCTGCGCGCAGGCC GTTTAATCCATCTGACTGCC
Downstream 100 bases:
>100_bases CTGATGCGAGCGGCACTGCGCCGCTTGCCCGTACCACTGAGGAAGACATGGAGTTTCAAAAGGAAATCGACGCGCGCGGC CTGAATTGCCCGCTGCCCAT
Product: NUDIX hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MSFDYRFCPQCATPLVEQHNAGRLRIACPGQDCGFVHWNNPLPVLAAVVEYRGQMFLARNALWPEGMFALVTGFLERDET PEEGIARELKEETNLDAQSISLIGVYEFIRKNELIIAYHVVADGEIALSEELVEYRLKPFEKVRPWTAGTGYAVADFLTA RGLPVSYIDIRTGEPAEPPPRQWQPTRLVTIPE
Sequences:
>Translated_193_residues MSFDYRFCPQCATPLVEQHNAGRLRIACPGQDCGFVHWNNPLPVLAAVVEYRGQMFLARNALWPEGMFALVTGFLERDET PEEGIARELKEETNLDAQSISLIGVYEFIRKNELIIAYHVVADGEIALSEELVEYRLKPFEKVRPWTAGTGYAVADFLTA RGLPVSYIDIRTGEPAEPPPRQWQPTRLVTIPE >Mature_192_residues SFDYRFCPQCATPLVEQHNAGRLRIACPGQDCGFVHWNNPLPVLAAVVEYRGQMFLARNALWPEGMFALVTGFLERDETP EEGIARELKEETNLDAQSISLIGVYEFIRKNELIIAYHVVADGEIALSEELVEYRLKPFEKVRPWTAGTGYAVADFLTAR GLPVSYIDIRTGEPAEPPPRQWQPTRLVTIPE
Specific function: Unknown
COG id: COG1051
COG function: function code F; ADP-ribose pyrophosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 nudix hydrolase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015375 - InterPro: IPR022925 - InterPro: IPR020476 - InterPro: IPR020084 - InterPro: IPR000086 - InterPro: IPR015797 - InterPro: IPR015376 [H]
Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]
EC number: =3.6.1.22 [H]
Molecular weight: Translated: 21807; Mature: 21676
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFDYRFCPQCATPLVEQHNAGRLRIACPGQDCGFVHWNNPLPVLAAVVEYRGQMFLARN CCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCHHHHHHHHHHCCCEEEECC ALWPEGMFALVTGFLERDETPEEGIARELKEETNLDAQSISLIGVYEFIRKNELIIAYHV CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEE VADGEIALSEELVEYRLKPFEKVRPWTAGTGYAVADFLTARGLPVSYIDIRTGEPAEPPP EECCCCHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCC RQWQPTRLVTIPE CCCCCCEEEECCC >Mature Secondary Structure SFDYRFCPQCATPLVEQHNAGRLRIACPGQDCGFVHWNNPLPVLAAVVEYRGQMFLARN CCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCHHHHHHHHHHCCCEEEECC ALWPEGMFALVTGFLERDETPEEGIARELKEETNLDAQSISLIGVYEFIRKNELIIAYHV CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEE VADGEIALSEELVEYRLKPFEKVRPWTAGTGYAVADFLTARGLPVSYIDIRTGEPAEPPP EECCCCHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCC RQWQPTRLVTIPE CCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA