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The map label for this gene is yckA [H]

Identifier: 187927129

GI number: 187927129

Start: 30846

End: 31499

Strand: Direct

Name: yckA [H]

Synonym: Rpic_0019

Alternate gene names: 187927129

Gene position: 30846-31499 (Clockwise)

Preceding gene: 187927128

Following gene: 187927130

Centisome position: 0.78

GC content: 62.54

Gene sequence:

>654_bases
ATGATTGCCGACATCCCTCTGTTGCCCATTCTCCTCAAGCTGGGGGAGGGACTGCTTGCCACGCTCATGCTGTCGCTCAT
GGCCTTTGCGCTGGGCGGCACGGCCGGCCTGGTGGTGCTGTTTGCCCGTGTGGGGCGCAACGCCACGCTTCAGCGCGTGA
GCAAGGCGTACATCCAGCTCTTCCAGAACACGCCGCTGCTCATGCAGATGTTCATCGTGTTCTTTGGTGCGTCCATGGCG
GGGTTTGAGATGTCGCCGTGGACGGCTGCCGCCATCGGCCTGACGCTGTACACCAGTGCCTATCTGGCCGAGGTGTGGCG
CGGCTGTGTCGAGGCCATTCCGCGCGGGCAGTGGGAAGCGTCTTCCAGCCTGGCGATGGGCTACTTCCAGCAGATGCGCC
ACGTGGTGCTGCCGCAGGCGGTGCGCCTGTCGATTGCGCCCACGGTCGGGTTCTCCGTGCAGATCGTCAAGGGCACGGCG
GTGGCGTCCATCATCGGGTTTGAAGACCTGTCCAAGCTGGGTTCGGTGCTGGCCAATGCCACCTTCCAGCCATTCCTTAT
CTACGGGCTGGTAGCCATTGGGTATTTCGCGCTGTGCTGGCCGCTGTCTCTTTACGCCTCTCATCTGGAAAAGAAGCTCT
ATGCCGCTCGTTGA

Upstream 100 bases:

>100_bases
GGATCGGGCAGCGCTTTGTCGTGGGGCGCCGCGCGCCTGCGGCGTCCGCTGCTCCGCTTGCTGCCACCGCCACCGCAGCC
GCCTCCGTTGGAGACGCCGC

Downstream 100 bases:

>100_bases
TCTCTGCGCCGTACACAAGCATTACGGCAACAACCACGTTCTCAAGGGCGTCGACCTGCGCGTGGAGGCCGGCCAGGTGG
TCGCCATCATTGGGCGCAGC

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIADIPLLPILLKLGEGLLATLMLSLMAFALGGTAGLVVLFARVGRNATLQRVSKAYIQLFQNTPLLMQMFIVFFGASMA
GFEMSPWTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEASSSLAMGYFQQMRHVVLPQAVRLSIAPTVGFSVQIVKGTA
VASIIGFEDLSKLGSVLANATFQPFLIYGLVAIGYFALCWPLSLYASHLEKKLYAAR

Sequences:

>Translated_217_residues
MIADIPLLPILLKLGEGLLATLMLSLMAFALGGTAGLVVLFARVGRNATLQRVSKAYIQLFQNTPLLMQMFIVFFGASMA
GFEMSPWTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEASSSLAMGYFQQMRHVVLPQAVRLSIAPTVGFSVQIVKGTA
VASIIGFEDLSKLGSVLANATFQPFLIYGLVAIGYFALCWPLSLYASHLEKKLYAAR
>Mature_217_residues
MIADIPLLPILLKLGEGLLATLMLSLMAFALGGTAGLVVLFARVGRNATLQRVSKAYIQLFQNTPLLMQMFIVFFGASMA
GFEMSPWTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEASSSLAMGYFQQMRHVVLPQAVRLSIAPTVGFSVQIVKGTA
VASIIGFEDLSKLGSVLANATFQPFLIYGLVAIGYFALCWPLSLYASHLEKKLYAAR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=206, Percent_Identity=33.495145631068, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=29.0476190476191, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082239, Length=210, Percent_Identity=31.9047619047619, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788645, Length=206, Percent_Identity=26.2135922330097, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1788646, Length=182, Percent_Identity=26.9230769230769, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787086, Length=210, Percent_Identity=25.7142857142857, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786873, Length=221, Percent_Identity=25.7918552036199, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI48994930, Length=218, Percent_Identity=29.3577981651376, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786874, Length=216, Percent_Identity=24.537037037037, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787087, Length=180, Percent_Identity=28.8888888888889, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23490; Mature: 23490

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIADIPLLPILLKLGEGLLATLMLSLMAFALGGTAGLVVLFARVGRNATLQRVSKAYIQL
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
FQNTPLLMQMFIVFFGASMAGFEMSPWTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEA
HCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SSSLAMGYFQQMRHVVLPQAVRLSIAPTVGFSVQIVKGTAVASIIGFEDLSKLGSVLANA
HHHHHHHHHHHHHHHHCCHHHHHEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
TFQPFLIYGLVAIGYFALCWPLSLYASHLEKKLYAAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIADIPLLPILLKLGEGLLATLMLSLMAFALGGTAGLVVLFARVGRNATLQRVSKAYIQL
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
FQNTPLLMQMFIVFFGASMAGFEMSPWTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEA
HCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SSSLAMGYFQQMRHVVLPQAVRLSIAPTVGFSVQIVKGTAVASIIGFEDLSKLGSVLANA
HHHHHHHHHHHHHHHHCCHHHHHEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
TFQPFLIYGLVAIGYFALCWPLSLYASHLEKKLYAAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]