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The map label for this gene is yjcD [H]

Identifier: 187935725

GI number: 187935725

Start: 2956259

End: 2958265

Strand: Reverse

Name: yjcD [H]

Synonym: CLL_A2877

Alternate gene names: 187935725

Gene position: 2958265-2956259 (Counterclockwise)

Preceding gene: 187934828

Following gene: 187933639

Centisome position: 77.84

GC content: 24.17

Gene sequence:

>2007_bases
ATGTATAATCTGGATATATATCAAAATGAAGCAGTGATAACTAAGGATAAAAATGCATTAATTATTGCAGCTCCTGGATC
TGGAAAAACTACTGTAATAATTAACAGAATATATTATTTAGTTAATAAGCTAAAAGTTAGTAATGGACGTATAATAATAA
TTACATTTACTAAAGCAGCAGCTAAAAATATGAAAGAAAGATATGAAAATAGATTTAAACAAAATATATCACCATTCTTT
GGTACATTTCATGGACTCTTTTACAAAATCCTTTTAAGAACAGGAAAAAGTATAGATATAATAGATGGAAGTATTGTAAA
TAAGCTCATAAATAAAGTGTTAACGAAGTATTTTGATGATATTAATGAGGATAAGATTAAAGAAGTTTTAAATAATATAT
CATTATATAAAACTTCAAGGATAAGACTAGGCGATTTCAAACCATCTGTATCTAGAGAAATATTTGAAGATGCTTTAGAG
TGTTATGAACATTATAAAAAAGAGCATGGAAAAATAGATTTTGATGATTTAGCCATAGAAGCGTTAGAATTACTTGAGAG
TAATGAAAAAGCATTAATTTATTATAGAAAATTATTTAAATATATTTTAGTGGATGAATTTCAAGATTGTGATGAATTGC
AAATTGAGTTTTTAAAATTAATAAATGATGGTGAAGATAATTCATTATTTGCAGTTGGTGATGAAGATCAATGTATTTAT
TCATTTAGAGGCTCTAAACCTATGTATATGGTTACTTTTGATAATATGTTTAAAGATAGTAAAAAACACTATTTATCAAT
AAATTATAGAAGTAAAGACAATATAGTTGAGAGATCTAAGAAACTAATAAAGTTTAATAAGGAAAGAAATAATAAAGAGA
TATTATCTAATAAAAAAGATGATGGGATAATTAAGTTTTATACTCCTTATAATGAAAAAGCTCAAGGTGATATTTTAGCT
AATTTAGTTAAAAACGAAAAAAAATATAATATCAATTATGAAGAAAATGCAATTCTTTATAGAACTAACATGGAAGCTAT
GAGTATTATAGACGCATTTACTAAAAATCATATTCCCTTTAGGTTATTAGACAGACAATATAATTTTTTTGAGCATTTTA
TTTGTAAAGATTTGATAGCATATTTAAAATTAGTTGTAAATCCTTTTGATAAGGAGAGTTTTATAAAAATTATAAATAAG
CCATTTAGATATATAAGTAAGCATAATATAGATTATGTGAGAAATTATACTATACAGGAAAATTTATTTAATATATTAAT
AAATAAAGAAGATACTCCACCTTTCCAAAGAAAAAATCTTGATGAATTAAAAAAAGATTTCAATTATTTAAATAAAATTT
CTTTAGGTTCTGCAATTGCATATATAGTTATGGATTTAGAATATATAGACTACTTAAAATCTTATTGTGAAAAGTTTAGT
CAAAATCTAGAAGATTTAGAAGAGGTAATTGAAGAATTCAAATTATCTGCAGAAGGATTTAAAAATATATTTGATTTTTT
AGCTCATATTGAAAATGTAAGCAATGAAATAGAGGAAAGTAAAAATAAAAATCAAAGAGAAGGGGTAATCCTTAGTACAA
TTCATGGTGTAAAGGGTATGGAATTTAAAAATGTATATCTTGTAAATTGTAATGAAGATACTATTCCACATTCATCTAGT
AAAGAGGAAAACATAGAAGAAGAAAGAAGACTTTTTTATGTTGGTATAACAAGAGCCATAGACAATCTTTATTTATTTGC
ACCTAAAAATAGAAGAGGGCAACTCAAGGATATATCTAGGTTTATATGTGAATCGGAATTTGATAAATTACCTAAGGATA
CTTATGGATATAAGGTAGATGATAATATAAGTCAAAAAACTTATGGATTAGGAAAGATAAAGTTTATAGAAGATGATAAA
GTTACTATAAGTTTTGAAGATGGAGTTAATAGGAGTTTTTCGTTAAAGGTATTGGCAGAGAATGATTTAATTCAGAAAAT
TATTTAA

Upstream 100 bases:

>100_bases
AATAAAATCATTGTACATCTATAATATAATTATTACAATATAGTTATTTATTGCGTTATTATATAATAATTCAAGAATTA
AGTGAGGAAAGAGGAAGCTA

Downstream 100 bases:

>100_bases
TGAAAGATGAAATCACATTAAAAGGATAATAGATAATGTTTATAAATGATAAATATGTTAGAAGAATTTTATAAATACTT
AAATAAAGGGTTTTGTATGA

Product: ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 668; Mature: 668

Protein sequence:

>668_residues
MYNLDIYQNEAVITKDKNALIIAAPGSGKTTVIINRIYYLVNKLKVSNGRIIIITFTKAAAKNMKERYENRFKQNISPFF
GTFHGLFYKILLRTGKSIDIIDGSIVNKLINKVLTKYFDDINEDKIKEVLNNISLYKTSRIRLGDFKPSVSREIFEDALE
CYEHYKKEHGKIDFDDLAIEALELLESNEKALIYYRKLFKYILVDEFQDCDELQIEFLKLINDGEDNSLFAVGDEDQCIY
SFRGSKPMYMVTFDNMFKDSKKHYLSINYRSKDNIVERSKKLIKFNKERNNKEILSNKKDDGIIKFYTPYNEKAQGDILA
NLVKNEKKYNINYEENAILYRTNMEAMSIIDAFTKNHIPFRLLDRQYNFFEHFICKDLIAYLKLVVNPFDKESFIKIINK
PFRYISKHNIDYVRNYTIQENLFNILINKEDTPPFQRKNLDELKKDFNYLNKISLGSAIAYIVMDLEYIDYLKSYCEKFS
QNLEDLEEVIEEFKLSAEGFKNIFDFLAHIENVSNEIEESKNKNQREGVILSTIHGVKGMEFKNVYLVNCNEDTIPHSSS
KEENIEEERRLFYVGITRAIDNLYLFAPKNRRGQLKDISRFICESEFDKLPKDTYGYKVDDNISQKTYGLGKIKFIEDDK
VTISFEDGVNRSFSLKVLAENDLIQKII

Sequences:

>Translated_668_residues
MYNLDIYQNEAVITKDKNALIIAAPGSGKTTVIINRIYYLVNKLKVSNGRIIIITFTKAAAKNMKERYENRFKQNISPFF
GTFHGLFYKILLRTGKSIDIIDGSIVNKLINKVLTKYFDDINEDKIKEVLNNISLYKTSRIRLGDFKPSVSREIFEDALE
CYEHYKKEHGKIDFDDLAIEALELLESNEKALIYYRKLFKYILVDEFQDCDELQIEFLKLINDGEDNSLFAVGDEDQCIY
SFRGSKPMYMVTFDNMFKDSKKHYLSINYRSKDNIVERSKKLIKFNKERNNKEILSNKKDDGIIKFYTPYNEKAQGDILA
NLVKNEKKYNINYEENAILYRTNMEAMSIIDAFTKNHIPFRLLDRQYNFFEHFICKDLIAYLKLVVNPFDKESFIKIINK
PFRYISKHNIDYVRNYTIQENLFNILINKEDTPPFQRKNLDELKKDFNYLNKISLGSAIAYIVMDLEYIDYLKSYCEKFS
QNLEDLEEVIEEFKLSAEGFKNIFDFLAHIENVSNEIEESKNKNQREGVILSTIHGVKGMEFKNVYLVNCNEDTIPHSSS
KEENIEEERRLFYVGITRAIDNLYLFAPKNRRGQLKDISRFICESEFDKLPKDTYGYKVDDNISQKTYGLGKIKFIEDDK
VTISFEDGVNRSFSLKVLAENDLIQKII
>Mature_668_residues
MYNLDIYQNEAVITKDKNALIIAAPGSGKTTVIINRIYYLVNKLKVSNGRIIIITFTKAAAKNMKERYENRFKQNISPFF
GTFHGLFYKILLRTGKSIDIIDGSIVNKLINKVLTKYFDDINEDKIKEVLNNISLYKTSRIRLGDFKPSVSREIFEDALE
CYEHYKKEHGKIDFDDLAIEALELLESNEKALIYYRKLFKYILVDEFQDCDELQIEFLKLINDGEDNSLFAVGDEDQCIY
SFRGSKPMYMVTFDNMFKDSKKHYLSINYRSKDNIVERSKKLIKFNKERNNKEILSNKKDDGIIKFYTPYNEKAQGDILA
NLVKNEKKYNINYEENAILYRTNMEAMSIIDAFTKNHIPFRLLDRQYNFFEHFICKDLIAYLKLVVNPFDKESFIKIINK
PFRYISKHNIDYVRNYTIQENLFNILINKEDTPPFQRKNLDELKKDFNYLNKISLGSAIAYIVMDLEYIDYLKSYCEKFS
QNLEDLEEVIEEFKLSAEGFKNIFDFLAHIENVSNEIEESKNKNQREGVILSTIHGVKGMEFKNVYLVNCNEDTIPHSSS
KEENIEEERRLFYVGITRAIDNLYLFAPKNRRGQLKDISRFICESEFDKLPKDTYGYKVDDNISQKTYGLGKIKFIEDDK
VTISFEDGVNRSFSLKVLAENDLIQKII

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI2367296, Length=625, Percent_Identity=27.68, Blast_Score=239, Evalue=5e-64,
Organism=Escherichia coli, GI48994965, Length=650, Percent_Identity=29.0769230769231, Blast_Score=209, Evalue=4e-55,
Organism=Saccharomyces cerevisiae, GI6322369, Length=440, Percent_Identity=27.5, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6324477, Length=660, Percent_Identity=23.4848484848485, Blast_Score=84, Evalue=5e-17,

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 78544; Mature: 78544

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNLDIYQNEAVITKDKNALIIAAPGSGKTTVIINRIYYLVNKLKVSNGRIIIITFTKAA
CCCCEEECCCEEEEECCCEEEEEECCCCCEEEHHHHHHHHHHHHEECCCEEEEEEECHHH
AKNMKERYENRFKQNISPFFGTFHGLFYKILLRTGKSIDIIDGSIVNKLINKVLTKYFDD
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHC
INEDKIKEVLNNISLYKTSRIRLGDFKPSVSREIFEDALECYEHYKKEHGKIDFDDLAIE
CCHHHHHHHHHCCCEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ALELLESNEKALIYYRKLFKYILVDEFQDCDELQIEFLKLINDGEDNSLFAVGDEDQCIY
HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEE
SFRGSKPMYMVTFDNMFKDSKKHYLSINYRSKDNIVERSKKLIKFNKERNNKEILSNKKD
EECCCCCEEEEEEHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHCCCCC
DGIIKFYTPYNEKAQGDILANLVKNEKKYNINYEENAILYRTNMEAMSIIDAFTKNHIPF
CCEEEEECCCCCCCCHHHHHHHHCCCCEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCC
RLLDRQYNFFEHFICKDLIAYLKLVVNPFDKESFIKIINKPFRYISKHNIDYVRNYTIQE
EEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCHHH
NLFNILINKEDTPPFQRKNLDELKKDFNYLNKISLGSAIAYIVMDLEYIDYLKSYCEKFS
HHHHEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNLEDLEEVIEEFKLSAEGFKNIFDFLAHIENVSNEIEESKNKNQREGVILSTIHGVKGM
HCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
EFKNVYLVNCNEDTIPHSSSKEENIEEERRLFYVGITRAIDNLYLFAPKNRRGQLKDISR
EECCEEEEECCCCCCCCCCCCCCCHHHHHHEEEEEHHHHHCCEEEECCCCCCCCHHHHHH
FICESEFDKLPKDTYGYKVDDNISQKTYGLGKIKFIEDDKVTISFEDGVNRSFSLKVLAE
HHHHHHHHCCCCCCCCEECCCCCCHHHCCCCEEEEEECCEEEEEECCCCCCEEEEEEEEC
NDLIQKII
CHHHHHCC
>Mature Secondary Structure
MYNLDIYQNEAVITKDKNALIIAAPGSGKTTVIINRIYYLVNKLKVSNGRIIIITFTKAA
CCCCEEECCCEEEEECCCEEEEEECCCCCEEEHHHHHHHHHHHHEECCCEEEEEEECHHH
AKNMKERYENRFKQNISPFFGTFHGLFYKILLRTGKSIDIIDGSIVNKLINKVLTKYFDD
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHC
INEDKIKEVLNNISLYKTSRIRLGDFKPSVSREIFEDALECYEHYKKEHGKIDFDDLAIE
CCHHHHHHHHHCCCEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ALELLESNEKALIYYRKLFKYILVDEFQDCDELQIEFLKLINDGEDNSLFAVGDEDQCIY
HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEE
SFRGSKPMYMVTFDNMFKDSKKHYLSINYRSKDNIVERSKKLIKFNKERNNKEILSNKKD
EECCCCCEEEEEEHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHCCCCC
DGIIKFYTPYNEKAQGDILANLVKNEKKYNINYEENAILYRTNMEAMSIIDAFTKNHIPF
CCEEEEECCCCCCCCHHHHHHHHCCCCEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCC
RLLDRQYNFFEHFICKDLIAYLKLVVNPFDKESFIKIINKPFRYISKHNIDYVRNYTIQE
EEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCHHH
NLFNILINKEDTPPFQRKNLDELKKDFNYLNKISLGSAIAYIVMDLEYIDYLKSYCEKFS
HHHHEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNLEDLEEVIEEFKLSAEGFKNIFDFLAHIENVSNEIEESKNKNQREGVILSTIHGVKGM
HCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
EFKNVYLVNCNEDTIPHSSSKEENIEEERRLFYVGITRAIDNLYLFAPKNRRGQLKDISR
EECCEEEEECCCCCCCCCCCCCCCHHHHHHEEEEEHHHHHCCEEEECCCCCCCCHHHHHH
FICESEFDKLPKDTYGYKVDDNISQKTYGLGKIKFIEDDKVTISFEDGVNRSFSLKVLAE
HHHHHHHHCCCCCCCCEECCCCCCHHHCCCCEEEEEECCEEEEEECCCCCCEEEEEEEEC
NDLIQKII
CHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]