| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is xynB [H]
Identifier: 187935476
GI number: 187935476
Start: 689383
End: 691899
Strand: Reverse
Name: xynB [H]
Synonym: CLL_A0691
Alternate gene names: 187935476
Gene position: 691899-689383 (Counterclockwise)
Preceding gene: 187933459
Following gene: 187935720
Centisome position: 18.21
GC content: 28.61
Gene sequence:
>2517_bases ATGAATACAAATAAAGAACTTGTAAATTTTAAAACTTCATCTTCTATGCATATTTCTGTACTTGCAATTGAAAACTTAGA AAGGTATTGGCATCAGAGTATAGAGCTAATATATGTATTAGCTGGCAGCGTCCAAGTTCAATGTCGTAATATGCAGTACA ATTTGCATGAAGATGATCTTATTCTTATAAATATGTTTGATGTACATGCCTTATCTGGTGACCAATGCGAAGTATTATCA TTAAAAATTGATATTTCTGCGCTTAATCCTGAAATTTCTCATTTTTCTCAAAAGCGATTTGACTGCAATTCATCCTTAGA AGCAGATGAAACTAAATTTATTCCCTTAAAACGGCTTCTTGCTTTAATTGTAAAATCCAATGTTAATCCTGAAGATAATA TTGAACTTTTAAATAAATCATATGTTTATGAATTACTGTACATATTAACTACTAATTTTAAGGTAGAAGGCACTACTAAT TCTACCGATATAAATAAAAACTCAGAAAGAATAAAAAATATATTAAATTACATAAGCGAAAATTATACAAAAAAAATATC ATTAAATAATCTAGCAGATACATTCTATCTGTCTATGCCATATATTTCAAAAATCTTCAAAGAATTAATAGGTCTTAGTT TTAGCGATTATTTAACGGAAGTTAGGCTTTCCCATGCAATAAAAGATTTAGCTAATGCTAATTTAAAAATTGAATATATT GCTGAAAAAAATGGATTTTCAAATACACGTTCCTTTGTTTCTGCTTTTAAAAATAAATATGACTATCTTCCAAGTAAATA TCGTAAAAAAATAGATACATATTCTTCTGATGGTCAGAAGAGCATGACAGAAAGTATAAATTATTTTGCATTGCGTCATA ATACTTCCTTTAATCGTCTGGTAGATTATCTTAAACACGACATTATTATCACAGAAGAAAATAAGCCTGATACTACAATT TATGAAATTGATCCAATTGATACTTCAATAAAAGGAGTGCAGTTAAAACATACATTTAAAACTCTTACTTGTATTGGAAA GGCAAAGCATGTATTGATTTCTGAAAGTCAACATATGCTTCGTCAGGTGCAACAAGATATCGGATTTAAATATATTCGCT TTCATGGGTTACTTGATGATGAAATGATGTTTTATTCTGAAAATGAAGAAGGCTCACCAGAGCTTTGTTTTACTTATATT GATTTAGTAATAGATTTTCTTCTTTCAATTAATTTAAAACCTTTTATGGAACTTTCTTTTATGCCAAAAGAGCTTGCAAT GGACCCTACTCGTACAATGTTTTTTATTGGTTCAATTATTAGTCTTCCAAAAAGCATGGAAAAGTGGACTTATATTATTC AGCAGCTAATTAAACATTTTATTTCTCGCTATGGTAAAAAAGAAGTGGAATCTTGGCCATTTTTCCTTTGGAATGAACCA GATCTTAAAAAAATGTTTGGTTTTGAAAACAGAACTAACTTTTTTAATTTTTATAAAGAAACATATGAAACTATAAAGAT GATTAATCCTTATATTAATTTTGGAAGTTCTCCAGTTTTTGCTGATACGCTAGCAGGCTCAAATGACTGGTTAGATGCAT TTATGGATTTTTGTAAATTAAATGATTGTTTGCCTGATTTTATAAATATGCATTTTTATCCAATGAATTTATCTGGGGAA GATGCCACCACTCTTTCAAGAAAAGCTCATGGTGAAATGCGAAGATATCTTGTATATATGGAATCTGAAAATGCCTTAAA TGAAAATATTCAATGTATAAAAAAAAGATTCATGGAAAATAATTGGATCGCTGACAAATTATATTTAAGTGGTTGGAATT CTTCAATCTCCTACAATGAGCTATTGAATGATACTGTATATAAAGCAACTTATATTGCTAAAAACATATTAGAAAATTAT GATACCCTTGAAAGTTTTGGTTATTGGCAACTTTCAGATTTTACTGAAGAAGTAAAGATGAAAAATCAATTGTATCATGG TGGACAAGGAATTTTCACTTATAATGGAATAAAAAAATCCCATTATTATGTTTTTCAAATGCTTAGTAAACTTAGTGATA GATTACTTGAAAAAGGAGATGGATTCTTTATAACTACAGATGGGAATTCAATTGAAATAATGTTATATAATTATCAACAT TATTCAAAACTTTATGCATCAGGTGAAGTATTTGATATGACTTTTAATCATAGATATAAGCCGTTTCCAAAACCAAATAT ATTAAAAGTAATTCTTCCACTTACAAACCTTTCTGAAGCTAGTTACCATTTAACAGAAACTATTGTAAATAAGCAATATG GAAGTTCTTTTGACAAATGGCTTGAATTAGGTGGCCTGCCCCTAGAAAGCAATGATGATATTGAGTATTTAAAATCTGTA TCCCTTCCAAAAATCCAGAAAAAAATACTGTCTACAGAAAATAACGCTTTAACAATAACTGCCGAATTAGAACCTCATGA AGTACGCTTGATAGAAATTAAACCTCTATTTCAGTAG
Upstream 100 bases:
>100_bases TTTATTTTTCTTTCTCATATGCTACAATCATTTGTGTTAGTGCAATAATTTTGTCACACCATAAAATTTTAGTACTATCT TCTTAATATGGAGGTACCTT
Downstream 100 bases:
>100_bases TTATATTTTCTTTTATTTATAATGTAGTGAACTTTAGTATATATACATGAAAAGACCCACGACATTTCTGTCGTGGGTTT CATGGTGGAGGCGAGGGGTC
Product: AraC family transcriptional regulator
Products: NA
Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]
Number of amino acids: Translated: 838; Mature: 838
Protein sequence:
>838_residues MNTNKELVNFKTSSSMHISVLAIENLERYWHQSIELIYVLAGSVQVQCRNMQYNLHEDDLILINMFDVHALSGDQCEVLS LKIDISALNPEISHFSQKRFDCNSSLEADETKFIPLKRLLALIVKSNVNPEDNIELLNKSYVYELLYILTTNFKVEGTTN STDINKNSERIKNILNYISENYTKKISLNNLADTFYLSMPYISKIFKELIGLSFSDYLTEVRLSHAIKDLANANLKIEYI AEKNGFSNTRSFVSAFKNKYDYLPSKYRKKIDTYSSDGQKSMTESINYFALRHNTSFNRLVDYLKHDIIITEENKPDTTI YEIDPIDTSIKGVQLKHTFKTLTCIGKAKHVLISESQHMLRQVQQDIGFKYIRFHGLLDDEMMFYSENEEGSPELCFTYI DLVIDFLLSINLKPFMELSFMPKELAMDPTRTMFFIGSIISLPKSMEKWTYIIQQLIKHFISRYGKKEVESWPFFLWNEP DLKKMFGFENRTNFFNFYKETYETIKMINPYINFGSSPVFADTLAGSNDWLDAFMDFCKLNDCLPDFINMHFYPMNLSGE DATTLSRKAHGEMRRYLVYMESENALNENIQCIKKRFMENNWIADKLYLSGWNSSISYNELLNDTVYKATYIAKNILENY DTLESFGYWQLSDFTEEVKMKNQLYHGGQGIFTYNGIKKSHYYVFQMLSKLSDRLLEKGDGFFITTDGNSIEIMLYNYQH YSKLYASGEVFDMTFNHRYKPFPKPNILKVILPLTNLSEASYHLTETIVNKQYGSSFDKWLELGGLPLESNDDIEYLKSV SLPKIQKKILSTENNALTITAELEPHEVRLIEIKPLFQ
Sequences:
>Translated_838_residues MNTNKELVNFKTSSSMHISVLAIENLERYWHQSIELIYVLAGSVQVQCRNMQYNLHEDDLILINMFDVHALSGDQCEVLS LKIDISALNPEISHFSQKRFDCNSSLEADETKFIPLKRLLALIVKSNVNPEDNIELLNKSYVYELLYILTTNFKVEGTTN STDINKNSERIKNILNYISENYTKKISLNNLADTFYLSMPYISKIFKELIGLSFSDYLTEVRLSHAIKDLANANLKIEYI AEKNGFSNTRSFVSAFKNKYDYLPSKYRKKIDTYSSDGQKSMTESINYFALRHNTSFNRLVDYLKHDIIITEENKPDTTI YEIDPIDTSIKGVQLKHTFKTLTCIGKAKHVLISESQHMLRQVQQDIGFKYIRFHGLLDDEMMFYSENEEGSPELCFTYI DLVIDFLLSINLKPFMELSFMPKELAMDPTRTMFFIGSIISLPKSMEKWTYIIQQLIKHFISRYGKKEVESWPFFLWNEP DLKKMFGFENRTNFFNFYKETYETIKMINPYINFGSSPVFADTLAGSNDWLDAFMDFCKLNDCLPDFINMHFYPMNLSGE DATTLSRKAHGEMRRYLVYMESENALNENIQCIKKRFMENNWIADKLYLSGWNSSISYNELLNDTVYKATYIAKNILENY DTLESFGYWQLSDFTEEVKMKNQLYHGGQGIFTYNGIKKSHYYVFQMLSKLSDRLLEKGDGFFITTDGNSIEIMLYNYQH YSKLYASGEVFDMTFNHRYKPFPKPNILKVILPLTNLSEASYHLTETIVNKQYGSSFDKWLELGGLPLESNDDIEYLKSV SLPKIQKKILSTENNALTITAELEPHEVRLIEIKPLFQ >Mature_838_residues MNTNKELVNFKTSSSMHISVLAIENLERYWHQSIELIYVLAGSVQVQCRNMQYNLHEDDLILINMFDVHALSGDQCEVLS LKIDISALNPEISHFSQKRFDCNSSLEADETKFIPLKRLLALIVKSNVNPEDNIELLNKSYVYELLYILTTNFKVEGTTN STDINKNSERIKNILNYISENYTKKISLNNLADTFYLSMPYISKIFKELIGLSFSDYLTEVRLSHAIKDLANANLKIEYI AEKNGFSNTRSFVSAFKNKYDYLPSKYRKKIDTYSSDGQKSMTESINYFALRHNTSFNRLVDYLKHDIIITEENKPDTTI YEIDPIDTSIKGVQLKHTFKTLTCIGKAKHVLISESQHMLRQVQQDIGFKYIRFHGLLDDEMMFYSENEEGSPELCFTYI DLVIDFLLSINLKPFMELSFMPKELAMDPTRTMFFIGSIISLPKSMEKWTYIIQQLIKHFISRYGKKEVESWPFFLWNEP DLKKMFGFENRTNFFNFYKETYETIKMINPYINFGSSPVFADTLAGSNDWLDAFMDFCKLNDCLPDFINMHFYPMNLSGE DATTLSRKAHGEMRRYLVYMESENALNENIQCIKKRFMENNWIADKLYLSGWNSSISYNELLNDTVYKATYIAKNILENY DTLESFGYWQLSDFTEEVKMKNQLYHGGQGIFTYNGIKKSHYYVFQMLSKLSDRLLEKGDGFFITTDGNSIEIMLYNYQH YSKLYASGEVFDMTFNHRYKPFPKPNILKVILPLTNLSEASYHLTETIVNKQYGSSFDKWLELGGLPLESNDDIEYLKSV SLPKIQKKILSTENNALTITAELEPHEVRLIEIKPLFQ
Specific function: Unknown
COG id: COG3664
COG function: function code G; Beta-xylosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 39 family [H]
Homologues:
Organism=Escherichia coli, GI1790391, Length=106, Percent_Identity=29.2452830188679, Blast_Score=66, Evalue=9e-12,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000514 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF01229 Glyco_hydro_39 [H]
EC number: =3.2.1.37 [H]
Molecular weight: Translated: 97784; Mature: 97784
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTNKELVNFKTSSSMHISVLAIENLERYWHQSIELIYVLAGSVQVQCRNMQYNLHEDDL CCCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHEEEEEEEECCEEEEEECCCCCCCCCCE ILINMFDVHALSGDQCEVLSLKIDISALNPEISHFSQKRFDCNSSLEADETKFIPLKRLL EEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH ALIVKSNVNPEDNIELLNKSYVYELLYILTTNFKVEGTTNSTDINKNSERIKNILNYISE HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHC NYTKKISLNNLADTFYLSMPYISKIFKELIGLSFSDYLTEVRLSHAIKDLANANLKIEYI CCEEEEECCCCCHHHEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE AEKNGFSNTRSFVSAFKNKYDYLPSKYRKKIDTYSSDGQKSMTESINYFALRHNTSFNRL ECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHCCEEEEEECCCCHHHH VDYLKHDIIITEENKPDTTIYEIDPIDTSIKGVQLKHTFKTLTCIGKAKHVLISESQHML HHHHHCCEEEECCCCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHEEECCHHHHH RQVQQDIGFKYIRFHGLLDDEMMFYSENEEGSPELCFTYIDLVIDFLLSINLKPFMELSF HHHHHHCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCC MPKELAMDPTRTMFFIGSIISLPKSMEKWTYIIQQLIKHFISRYGKKEVESWPFFLWNEP CCHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCC DLKKMFGFENRTNFFNFYKETYETIKMINPYINFGSSPVFADTLAGSNDWLDAFMDFCKL CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHH NDCLPDFINMHFYPMNLSGEDATTLSRKAHGEMRRYLVYMESENALNENIQCIKKRFMEN HCCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHCC NWIADKLYLSGWNSSISYNELLNDTVYKATYIAKNILENYDTLESFGYWQLSDFTEEVKM CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH KNQLYHGGQGIFTYNGIKKSHYYVFQMLSKLSDRLLEKGDGFFITTDGNSIEIMLYNYQH HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCHH YSKLYASGEVFDMTFNHRYKPFPKPNILKVILPLTNLSEASYHLTETIVNKQYGSSFDKW HHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHH LELGGLPLESNDDIEYLKSVSLPKIQKKILSTENNALTITAELEPHEVRLIEIKPLFQ HHHCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCC >Mature Secondary Structure MNTNKELVNFKTSSSMHISVLAIENLERYWHQSIELIYVLAGSVQVQCRNMQYNLHEDDL CCCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHEEEEEEEECCEEEEEECCCCCCCCCCE ILINMFDVHALSGDQCEVLSLKIDISALNPEISHFSQKRFDCNSSLEADETKFIPLKRLL EEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH ALIVKSNVNPEDNIELLNKSYVYELLYILTTNFKVEGTTNSTDINKNSERIKNILNYISE HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHC NYTKKISLNNLADTFYLSMPYISKIFKELIGLSFSDYLTEVRLSHAIKDLANANLKIEYI CCEEEEECCCCCHHHEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE AEKNGFSNTRSFVSAFKNKYDYLPSKYRKKIDTYSSDGQKSMTESINYFALRHNTSFNRL ECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHCCEEEEEECCCCHHHH VDYLKHDIIITEENKPDTTIYEIDPIDTSIKGVQLKHTFKTLTCIGKAKHVLISESQHML HHHHHCCEEEECCCCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHEEECCHHHHH RQVQQDIGFKYIRFHGLLDDEMMFYSENEEGSPELCFTYIDLVIDFLLSINLKPFMELSF HHHHHHCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCC MPKELAMDPTRTMFFIGSIISLPKSMEKWTYIIQQLIKHFISRYGKKEVESWPFFLWNEP CCHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCC DLKKMFGFENRTNFFNFYKETYETIKMINPYINFGSSPVFADTLAGSNDWLDAFMDFCKL CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHH NDCLPDFINMHFYPMNLSGEDATTLSRKAHGEMRRYLVYMESENALNENIQCIKKRFMEN HCCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHCC NWIADKLYLSGWNSSISYNELLNDTVYKATYIAKNILENYDTLESFGYWQLSDFTEEVKM CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH KNQLYHGGQGIFTYNGIKKSHYYVFQMLSKLSDRLLEKGDGFFITTDGNSIEIMLYNYQH HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCHH YSKLYASGEVFDMTFNHRYKPFPKPNILKVILPLTNLSEASYHLTETIVNKQYGSSFDKW HHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHH LELGGLPLESNDDIEYLKSVSLPKIQKKILSTENNALTITAELEPHEVRLIEIKPLFQ HHHCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10368143 [H]