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The map label for this gene is yocR [H]

Identifier: 187934973

GI number: 187934973

Start: 2993479

End: 2994831

Strand: Reverse

Name: yocR [H]

Synonym: CLL_A2912

Alternate gene names: 187934973

Gene position: 2994831-2993479 (Counterclockwise)

Preceding gene: 187934877

Following gene: 187933514

Centisome position: 78.8

GC content: 29.86

Gene sequence:

>1353_bases
GTGGAACAGAAGAGAGAAAAATTTTCATCAAGTTTAACAGTTTTTTTAGCAACATTAAGTTCCGCTGTAGGTTTGGGTAA
TATATGGATGTTTCCTTATATTACAGGAGAAAATGGTGGAGCAGCATTTATTATTATATATTTAATATGTGTTGCATTAG
TAGCAGTACCAGTACTTATTAGTGAATTTATAATAGGTAGAGGTACTAGAAGGAACGTATATGGAGCAATTTCAAAGATT
ACAGATAAAAAAGGCTTTAAAGTTATAGGTATTTTTGCAATACTTGCAACATACTTTATGCTATTTTTCTATACAGTAGT
TGTTGGATGGGTTTATTCATACGTATTTAAAGCAGTAACAGGAGCGTTAAAAGGAGTGACATCAGAATCTGCAAGTACTA
TATTTTATAATACAAGTGTAGGACCAATCTCACCAATTGTCTGGCAGCTTATAGCATTATTAGTTGGAGGGACGATATTA
GTTTTAGGTGTAAAGGGTGGAATTGAAAAGTTAACTAAAACATTAATGCCTGTGTTAATTGTACTTCTTGTAGTTTGTGC
TGTTAGAAGTTTGACATTACCAGGATCTATGGAAGGTGTACATTTCTTGATTAAACCTGATTTTTCAAAGGTAAATATTG
GAGTTGTACTTTCAGCTTTAGGATTAGCATTTTTTAAGCTATCAGTTGGGACAGGTACAATGATTACATATAGCAGTTAT
TATAATGATGATAATAACTTAATTGGTACAGCAGGAAAAGTAGCAATATCAGATACCTTAGTATCATTAATAGCAGGACT
TGCCATATTTCCAGCAGTTTTCTCATTTGGATTAGAACCAAGTAGTGGTCCAGGCCTATTATTCAATACTGTACCTTTAA
TATTTGCTAAAATGCCAGGTGGTTGGATTTTAGTGATTATGTTTTTTGCTCTTACAGCAATGGCAGCTACAATGGCTATG
ATATCATTGTTAGAGGTTTTAACTGTATTCTTCACAGAAGAGTTAAAAATGGAAAGAAAGAGAGCAATAATACTAAATAT
TATAATAATAGTAGGAGTTGGGTCATTAGCAGCATTATCAGGTAATATAAATGGTGTTTTAGGTGATAAATTAATATTTG
GACTAACATTTTTTGATTTCTTTGATGCTATTGTATCTAAAGTATTTTTACCTATAAATGGATTGTTGATAATTTTATTA
ACTGGATACTTTATAAATAAAAAATATTTAATAGATCAATTAAGTAATAATGGAGTATTAAAGAATGAAGCAATAGTAAA
GGCTTTAATTTTTATTATGAAATACATAGCACCAATACTTATTATAGTAGTATTTTTAAAATCATTTATTTAA

Upstream 100 bases:

>100_bases
CAAAAAATAATGTTTAATGTTAAAATATAAAGAATTTTATTAAAAGATATGTTAATAAAAAGTTTAATATGTCTAGTATT
TAAAACAATGGAGGATTAGT

Downstream 100 bases:

>100_bases
AGTTTAACGTAATTACATAAATATATAACAATATAAAATTGAATAATGATAATAACAGGTATTCCTAATAGGAATTTTAA
GTGCTTAGTTTTATGTCTGA

Product: sodium transporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MEQKREKFSSSLTVFLATLSSAVGLGNIWMFPYITGENGGAAFIIIYLICVALVAVPVLISEFIIGRGTRRNVYGAISKI
TDKKGFKVIGIFAILATYFMLFFYTVVVGWVYSYVFKAVTGALKGVTSESASTIFYNTSVGPISPIVWQLIALLVGGTIL
VLGVKGGIEKLTKTLMPVLIVLLVVCAVRSLTLPGSMEGVHFLIKPDFSKVNIGVVLSALGLAFFKLSVGTGTMITYSSY
YNDDNNLIGTAGKVAISDTLVSLIAGLAIFPAVFSFGLEPSSGPGLLFNTVPLIFAKMPGGWILVIMFFALTAMAATMAM
ISLLEVLTVFFTEELKMERKRAIILNIIIIVGVGSLAALSGNINGVLGDKLIFGLTFFDFFDAIVSKVFLPINGLLIILL
TGYFINKKYLIDQLSNNGVLKNEAIVKALIFIMKYIAPILIIVVFLKSFI

Sequences:

>Translated_450_residues
MEQKREKFSSSLTVFLATLSSAVGLGNIWMFPYITGENGGAAFIIIYLICVALVAVPVLISEFIIGRGTRRNVYGAISKI
TDKKGFKVIGIFAILATYFMLFFYTVVVGWVYSYVFKAVTGALKGVTSESASTIFYNTSVGPISPIVWQLIALLVGGTIL
VLGVKGGIEKLTKTLMPVLIVLLVVCAVRSLTLPGSMEGVHFLIKPDFSKVNIGVVLSALGLAFFKLSVGTGTMITYSSY
YNDDNNLIGTAGKVAISDTLVSLIAGLAIFPAVFSFGLEPSSGPGLLFNTVPLIFAKMPGGWILVIMFFALTAMAATMAM
ISLLEVLTVFFTEELKMERKRAIILNIIIIVGVGSLAALSGNINGVLGDKLIFGLTFFDFFDAIVSKVFLPINGLLIILL
TGYFINKKYLIDQLSNNGVLKNEAIVKALIFIMKYIAPILIIVVFLKSFI
>Mature_450_residues
MEQKREKFSSSLTVFLATLSSAVGLGNIWMFPYITGENGGAAFIIIYLICVALVAVPVLISEFIIGRGTRRNVYGAISKI
TDKKGFKVIGIFAILATYFMLFFYTVVVGWVYSYVFKAVTGALKGVTSESASTIFYNTSVGPISPIVWQLIALLVGGTIL
VLGVKGGIEKLTKTLMPVLIVLLVVCAVRSLTLPGSMEGVHFLIKPDFSKVNIGVVLSALGLAFFKLSVGTGTMITYSSY
YNDDNNLIGTAGKVAISDTLVSLIAGLAIFPAVFSFGLEPSSGPGLLFNTVPLIFAKMPGGWILVIMFFALTAMAATMAM
ISLLEVLTVFFTEELKMERKRAIILNIIIIVGVGSLAALSGNINGVLGDKLIFGLTFFDFFDAIVSKVFLPINGLLIILL
TGYFINKKYLIDQLSNNGVLKNEAIVKALIFIMKYIAPILIIVVFLKSFI

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507043, Length=410, Percent_Identity=25.609756097561, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI58219014, Length=305, Percent_Identity=30.1639344262295, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI188528618, Length=425, Percent_Identity=25.4117647058824, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI4507041, Length=404, Percent_Identity=26.7326732673267, Blast_Score=109, Evalue=7e-24,
Organism=Homo sapiens, GI33354281, Length=307, Percent_Identity=28.0130293159609, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI51468073, Length=296, Percent_Identity=27.7027027027027, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI194018524, Length=297, Percent_Identity=27.6094276094276, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI21361581, Length=509, Percent_Identity=23.3791748526523, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI11181770, Length=299, Percent_Identity=25.752508361204, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI171184408, Length=403, Percent_Identity=23.0769230769231, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI171184406, Length=403, Percent_Identity=23.0769230769231, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI171184404, Length=403, Percent_Identity=23.0769230769231, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI289191351, Length=397, Percent_Identity=25.6926952141058, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI4557046, Length=397, Percent_Identity=25.6926952141058, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI289191377, Length=397, Percent_Identity=25.1889168765743, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI134304856, Length=402, Percent_Identity=23.8805970149254, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI197276623, Length=346, Percent_Identity=26.0115606936416, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI54607094, Length=346, Percent_Identity=26.0115606936416, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI12408638, Length=285, Percent_Identity=23.859649122807, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI5032097, Length=350, Percent_Identity=24, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI21361693, Length=123, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI67782317, Length=361, Percent_Identity=24.6537396121884, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI67782313, Length=400, Percent_Identity=24.25, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI67782315, Length=361, Percent_Identity=24.6537396121884, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI218563756, Length=350, Percent_Identity=23.4285714285714, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI6005715, Length=142, Percent_Identity=32.3943661971831, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI197276625, Length=120, Percent_Identity=34.1666666666667, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555248, Length=376, Percent_Identity=26.063829787234, Blast_Score=104, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17554804, Length=287, Percent_Identity=30.6620209059233, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI25146584, Length=394, Percent_Identity=22.5888324873096, Blast_Score=98, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17535731, Length=123, Percent_Identity=34.1463414634146, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI133952791, Length=117, Percent_Identity=32.4786324786325, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17136952, Length=446, Percent_Identity=25.1121076233184, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI281364394, Length=438, Percent_Identity=25.3424657534247, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI28574704, Length=438, Percent_Identity=25.3424657534247, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI17136950, Length=438, Percent_Identity=25.3424657534247, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI28574702, Length=438, Percent_Identity=25.3424657534247, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24762620, Length=395, Percent_Identity=26.8354430379747, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI45551183, Length=439, Percent_Identity=27.5626423690205, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI45550877, Length=439, Percent_Identity=27.7904328018223, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24652942, Length=341, Percent_Identity=27.2727272727273, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI45551088, Length=341, Percent_Identity=27.2727272727273, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI19921936, Length=404, Percent_Identity=25.990099009901, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI281363702, Length=339, Percent_Identity=28.3185840707965, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24655079, Length=297, Percent_Identity=26.9360269360269, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI281363700, Length=339, Percent_Identity=28.3185840707965, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI281365034, Length=317, Percent_Identity=25.8675078864353, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24661428, Length=382, Percent_Identity=26.4397905759162, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24582567, Length=433, Percent_Identity=23.7875288683603, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24639516, Length=294, Percent_Identity=26.8707482993197, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24639514, Length=294, Percent_Identity=26.8707482993197, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI221329674, Length=294, Percent_Identity=27.2108843537415, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI19921352, Length=320, Percent_Identity=25.9375, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24584353, Length=320, Percent_Identity=25.9375, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI281364136, Length=487, Percent_Identity=23.4086242299795, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24639853, Length=325, Percent_Identity=26.7692307692308, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24654186, Length=130, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48548; Mature: 48548

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQKREKFSSSLTVFLATLSSAVGLGNIWMFPYITGENGGAAFIIIYLICVALVAVPVLI
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
SEFIIGRGTRRNVYGAISKITDKKGFKVIGIFAILATYFMLFFYTVVVGWVYSYVFKAVT
HHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GALKGVTSESASTIFYNTSVGPISPIVWQLIALLVGGTILVLGVKGGIEKLTKTLMPVLI
HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHH
VLLVVCAVRSLTLPGSMEGVHFLIKPDFSKVNIGVVLSALGLAFFKLSVGTGTMITYSSY
HHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
YNDDNNLIGTAGKVAISDTLVSLIAGLAIFPAVFSFGLEPSSGPGLLFNTVPLIFAKMPG
ECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEECCC
GWILVIMFFALTAMAATMAMISLLEVLTVFFTEELKMERKRAIILNIIIIVGVGSLAALS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
GNINGVLGDKLIFGLTFFDFFDAIVSKVFLPINGLLIILLTGYFINKKYLIDQLSNNGVL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KNEAIVKALIFIMKYIAPILIIVVFLKSFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MEQKREKFSSSLTVFLATLSSAVGLGNIWMFPYITGENGGAAFIIIYLICVALVAVPVLI
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
SEFIIGRGTRRNVYGAISKITDKKGFKVIGIFAILATYFMLFFYTVVVGWVYSYVFKAVT
HHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GALKGVTSESASTIFYNTSVGPISPIVWQLIALLVGGTILVLGVKGGIEKLTKTLMPVLI
HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHH
VLLVVCAVRSLTLPGSMEGVHFLIKPDFSKVNIGVVLSALGLAFFKLSVGTGTMITYSSY
HHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
YNDDNNLIGTAGKVAISDTLVSLIAGLAIFPAVFSFGLEPSSGPGLLFNTVPLIFAKMPG
ECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEECCC
GWILVIMFFALTAMAATMAMISLLEVLTVFFTEELKMERKRAIILNIIIIVGVGSLAALS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
GNINGVLGDKLIFGLTFFDFFDAIVSKVFLPINGLLIILLTGYFINKKYLIDQLSNNGVL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KNEAIVKALIFIMKYIAPILIIVVFLKSFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]