| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is outE [H]
Identifier: 187934424
GI number: 187934424
Start: 2509684
End: 2510712
Strand: Reverse
Name: outE [H]
Synonym: CLL_A2426
Alternate gene names: 187934424
Gene position: 2510712-2509684 (Counterclockwise)
Preceding gene: 187935164
Following gene: 187933799
Centisome position: 66.07
GC content: 26.82
Gene sequence:
>1029_bases GTGGATATAAGATATAGAATTAATGGCGGATTAATTCTAGTTCACAAAATGCTTTTATCTGAATATTTAACTTTAGCTTC AAAAATAAAACTTAAAGCTAATATGGATATATCAGAAAGAAGAAAGCCACAAGATGGAAAAATAATTATAAATTACAACG ATAATAATTATGATTTAAGGGTTTCATCTATTCCCGTAGTTTATGGTGAAAAAATAGTTATAAGAATACTATATAGCGAA AATTTCAACTATAAATTAGACGATTTATACTACTCAAAAGAAAAAATAGAATTAATAAAAAAGATTATGTCATTAAAGAA AGGTCTAGTTTTAGTTAATGGACCAACTGGAAGTGGGAAATCGACAACTCTGTATACTATATTGAAAGAAATCAATATAG AAGATATAAATATAACAACTCTAGAAGACCCAGTGGAAGCAATCATTCCAAATATCAATCAAATGAGTTTAAATAAAAAA TTAGATATAAATTTTTCAAATGGTTTAAAAAATATATTAAGGCAAGATCCAGACGTTATCATGATTGGTGAGGTTAGAGA TGAAGAAACGGCAGCTATGTCTGTAAGAGCATCAATAACAGGACATAAAGTATATACAACTATCCATACGTCAACACCAA GAGAAGTCTTTCTCAGACTTGAGGATATGGGAATAAAACCATATTTACTTAGGGATTCAATTGTAGGAATAATATCCCAA AGATTAATAAAAATATTGTGTGAAAATTGTAAAAAAGAAGACATTAAGAATACTTATAAGGGAATTAAATTATATAAAAG AGCTAGTTGTTCAAAATGTAATTATTCTGGTTATGAATCAAGAAAACTTATAAGTGCTGTATACTTTTTAGATAAGGAAT ATGATGAAATTGATATTTATAAAGATAAGTACTGCTTATCTAATATTGGTATGAAAGATGATTTAGAGGAGTTATTAAAA AGAGGTCAAATATCCTATGAAGATTATGTACGGTTTATGAAAGGAGAAGGATTAAATGAGTATCTTTAA
Upstream 100 bases:
>100_bases TATATTTAAAGTAGAAGATGAAGATATAGAAAACACTTTAATTTATAATGCTATTTTAAGGAATGCTAGTGATATACATT TTGAACCTTGCGAAAAAGAG
Downstream 100 bases:
>100_bases GAAAATACATTGTTTTCTTAAGAAAAGGTACAAAAAAATAAACTACAATGAATTAAGTTTGATTTCTGGAAGCTTAGCAC AATTATATAAAGATGGAATA
Product: type II/IV secretion system protein
Products: NA
Alternate protein names: Pectic enzymes secretion protein outE; Type II traffic warden ATPase [H]
Number of amino acids: Translated: 342; Mature: 342
Protein sequence:
>342_residues MDIRYRINGGLILVHKMLLSEYLTLASKIKLKANMDISERRKPQDGKIIINYNDNNYDLRVSSIPVVYGEKIVIRILYSE NFNYKLDDLYYSKEKIELIKKIMSLKKGLVLVNGPTGSGKSTTLYTILKEINIEDINITTLEDPVEAIIPNINQMSLNKK LDINFSNGLKNILRQDPDVIMIGEVRDEETAAMSVRASITGHKVYTTIHTSTPREVFLRLEDMGIKPYLLRDSIVGIISQ RLIKILCENCKKEDIKNTYKGIKLYKRASCSKCNYSGYESRKLISAVYFLDKEYDEIDIYKDKYCLSNIGMKDDLEELLK RGQISYEDYVRFMKGEGLNEYL
Sequences:
>Translated_342_residues MDIRYRINGGLILVHKMLLSEYLTLASKIKLKANMDISERRKPQDGKIIINYNDNNYDLRVSSIPVVYGEKIVIRILYSE NFNYKLDDLYYSKEKIELIKKIMSLKKGLVLVNGPTGSGKSTTLYTILKEINIEDINITTLEDPVEAIIPNINQMSLNKK LDINFSNGLKNILRQDPDVIMIGEVRDEETAAMSVRASITGHKVYTTIHTSTPREVFLRLEDMGIKPYLLRDSIVGIISQ RLIKILCENCKKEDIKNTYKGIKLYKRASCSKCNYSGYESRKLISAVYFLDKEYDEIDIYKDKYCLSNIGMKDDLEELLK RGQISYEDYVRFMKGEGLNEYL >Mature_342_residues MDIRYRINGGLILVHKMLLSEYLTLASKIKLKANMDISERRKPQDGKIIINYNDNNYDLRVSSIPVVYGEKIVIRILYSE NFNYKLDDLYYSKEKIELIKKIMSLKKGLVLVNGPTGSGKSTTLYTILKEINIEDINITTLEDPVEAIIPNINQMSLNKK LDINFSNGLKNILRQDPDVIMIGEVRDEETAAMSVRASITGHKVYTTIHTSTPREVFLRLEDMGIKPYLLRDSIVGIISQ RLIKILCENCKKEDIKNTYKGIKLYKRASCSKCNYSGYESRKLISAVYFLDKEYDEIDIYKDKYCLSNIGMKDDLEELLK RGQISYEDYVRFMKGEGLNEYL
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of pectate lyases and cellulases across the outer membrane [H]
COG id: COG2804
COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP E family [H]
Homologues:
Organism=Escherichia coli, GI1789723, Length=303, Percent_Identity=40.2640264026403, Blast_Score=245, Evalue=3e-66, Organism=Escherichia coli, GI1786296, Length=346, Percent_Identity=31.7919075144509, Blast_Score=215, Evalue=3e-57, Organism=Escherichia coli, GI87082188, Length=171, Percent_Identity=37.4269005847953, Blast_Score=102, Evalue=4e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013369 - InterPro: IPR001482 [H]
Pfam domain/function: PF00437 GSPII_E [H]
EC number: NA
Molecular weight: Translated: 39503; Mature: 39503
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: PS00662 T2SP_E
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIRYRINGGLILVHKMLLSEYLTLASKIKLKANMDISERRKPQDGKIIINYNDNNYDLR CCEEEEECCCCHHHHHHHHHHHHHHHHHEEEEECCCHHHCCCCCCCEEEEEECCCCEEEE VSSIPVVYGEKIVIRILYSENFNYKLDDLYYSKEKIELIKKIMSLKKGLVLVNGPTGSGK EEEECEEECCEEEEEEEECCCCCEEHHHHEECHHHHHHHHHHHHHHCCEEEEECCCCCCC STTLYTILKEINIEDINITTLEDPVEAIIPNINQMSLNKKLDINFSNGLKNILRQDPDVI CHHHHHHHHHCCCCEEEEEECCCCHHHHCCCCCCEECCCEEEEEHHHHHHHHHHCCCCEE MIGEVRDEETAAMSVRASITGHKVYTTIHTSTPREVFLRLEDMGIKPYLLRDSIVGIISQ EEECCCCCCHHHEEEEEEECCCEEEEEEECCCCHHHEEEHCCCCCCCEEHHHHHHHHHHH RLIKILCENCKKEDIKNTYKGIKLYKRASCSKCNYSGYESRKLISAVYFLDKEYDEIDIY HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE KDKYCLSNIGMKDDLEELLKRGQISYEDYVRFMKGEGLNEYL CCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC >Mature Secondary Structure MDIRYRINGGLILVHKMLLSEYLTLASKIKLKANMDISERRKPQDGKIIINYNDNNYDLR CCEEEEECCCCHHHHHHHHHHHHHHHHHEEEEECCCHHHCCCCCCCEEEEEECCCCEEEE VSSIPVVYGEKIVIRILYSENFNYKLDDLYYSKEKIELIKKIMSLKKGLVLVNGPTGSGK EEEECEEECCEEEEEEEECCCCCEEHHHHEECHHHHHHHHHHHHHHCCEEEEECCCCCCC STTLYTILKEINIEDINITTLEDPVEAIIPNINQMSLNKKLDINFSNGLKNILRQDPDVI CHHHHHHHHHCCCCEEEEEECCCCHHHHCCCCCCEECCCEEEEEHHHHHHHHHHCCCCEE MIGEVRDEETAAMSVRASITGHKVYTTIHTSTPREVFLRLEDMGIKPYLLRDSIVGIISQ EEECCCCCCHHHEEEEEEECCCEEEEEEECCCCHHHEEEHCCCCCCCEEHHHHHHHHHHH RLIKILCENCKKEDIKNTYKGIKLYKRASCSKCNYSGYESRKLISAVYFLDKEYDEIDIY HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE KDKYCLSNIGMKDDLEELLKRGQISYEDYVRFMKGEGLNEYL CCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1429461 [H]