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The map label for this gene is rfbH [H]

Identifier: 187933982

GI number: 187933982

Start: 2404396

End: 2405721

Strand: Reverse

Name: rfbH [H]

Synonym: CLL_A2328

Alternate gene names: 187933982

Gene position: 2405721-2404396 (Counterclockwise)

Preceding gene: 187932846

Following gene: 187934108

Centisome position: 63.3

GC content: 29.94

Gene sequence:

>1326_bases
ATGAGTATTACAAATTTTAATGAAAGTTCTGCAAGAATTGAAATATTAAATAAAGTGAAACAATTTTTTAAAGAAAAAAA
CTCAGGACAAAAATTTGTACATGGTGAAACATATATACCAGCATCAGGGAAAGTAGTGGATGAAGATGATTTGGCTAATT
TAATAGATGCATCTCTTGACATGTGGCTTACATCAGGAAGATATAAAGATAAGTTCGAAAGAGAATTTGCTAAATTTATA
GGTGTAAGATATTGCTCAATTGTAAACTCGGGTTCATCTGCAAATTTAGCAGCAGTAACAGCACTTACATCTTACACTCT
TGGAGAGAGGAGATTAAGATCAGGAGATGAGGTAATAACTATTGCAGCAGGCTTTCCAACAACAGTAGGACCATTAATTC
AAAATGGACTTATACCAGTATTTGTTGATGTAGAACTTGGAACTTATAATATTAAAGTAAAACATTTAGAAAAAGCAATA
TCTAATAAAACAAGAGCTATAGTGTTAGCACATACATTAGGAAATCCTTTTAATTTAGAAAAAGTAATGGAATTAGCTAA
AAAACATGATTTGTGGGTAATAGAAGACAACTGTGATGCACTTGGCGCAAGATATGATGGAAAATATACTGGAACTTTTG
GACATATGTCTACATTTAGTTTTTATCCAGCTCATCAAATAACTATGGGAGAAGGCGGAGCTGTAGTTACCGATGATGAA
AAATTATACAAGATAATATGTTCTATAAGGGATTGGGGAAGAGATTGTATATGTCCACCAGGAAAAGATGATTTTTGTGG
TAAGAGGTTTACACAACAGCATGGCGAACTACCATTTGGGTATGATCATAAATATGTATATTCTCACTTTGGATATAATT
TAAAAGTAACGGATATGCAAGCAGCAATCGGAATATCACAACTTAAAAAATTACCGCAATTTGTAAAAAAAAGAAGAGAA
AATTATAAAAAATTATATGAAGGGTTAAAGCAGTTTGAAAAATATTTAATATTACCAAAAGCTACAGATAATAGTAATCC
AAGTTGGTTTGGGTTTACTATTACTATTAGAGAAAATAATAACTATGATAGAAATAGTTTAGTTGAATTTTTAGAGAAGA
GAAATATAGGGACAAGATTATTATTTGCGGGAAATATATTAAGGCAACCATTATTTACAGAAAATAATATACATTATCGA
GTTGTTGGAAATCTAGCTAATACTGATATTATTATGAATAATACATTTTGGATTGGTGTATGGCCAGGAATTGATGATGA
ACAAATAGAGTATATTATATCACAATTTAAAGTGTATTTTAGTTAA

Upstream 100 bases:

>100_bases
TAGTTAAACAAAAAATAATATTATTTTTATGAAGTTATTTTGAAAGCATGGATATATTGAGGTATAAGAATGAGTTAGAA
AAAAATGTGGAGTGAGGAAA

Downstream 100 bases:

>100_bases
TATAATTTAAACAATGATGAAATAATAACAAGGAAAAATAATTAAGTTTAAAAACCCAGTAGAAAGCAATACTGTTGTTC
TACTGGGTTTATTATATTAT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MSITNFNESSARIEILNKVKQFFKEKNSGQKFVHGETYIPASGKVVDEDDLANLIDASLDMWLTSGRYKDKFEREFAKFI
GVRYCSIVNSGSSANLAAVTALTSYTLGERRLRSGDEVITIAAGFPTTVGPLIQNGLIPVFVDVELGTYNIKVKHLEKAI
SNKTRAIVLAHTLGNPFNLEKVMELAKKHDLWVIEDNCDALGARYDGKYTGTFGHMSTFSFYPAHQITMGEGGAVVTDDE
KLYKIICSIRDWGRDCICPPGKDDFCGKRFTQQHGELPFGYDHKYVYSHFGYNLKVTDMQAAIGISQLKKLPQFVKKRRE
NYKKLYEGLKQFEKYLILPKATDNSNPSWFGFTITIRENNNYDRNSLVEFLEKRNIGTRLLFAGNILRQPLFTENNIHYR
VVGNLANTDIIMNNTFWIGVWPGIDDEQIEYIISQFKVYFS

Sequences:

>Translated_441_residues
MSITNFNESSARIEILNKVKQFFKEKNSGQKFVHGETYIPASGKVVDEDDLANLIDASLDMWLTSGRYKDKFEREFAKFI
GVRYCSIVNSGSSANLAAVTALTSYTLGERRLRSGDEVITIAAGFPTTVGPLIQNGLIPVFVDVELGTYNIKVKHLEKAI
SNKTRAIVLAHTLGNPFNLEKVMELAKKHDLWVIEDNCDALGARYDGKYTGTFGHMSTFSFYPAHQITMGEGGAVVTDDE
KLYKIICSIRDWGRDCICPPGKDDFCGKRFTQQHGELPFGYDHKYVYSHFGYNLKVTDMQAAIGISQLKKLPQFVKKRRE
NYKKLYEGLKQFEKYLILPKATDNSNPSWFGFTITIRENNNYDRNSLVEFLEKRNIGTRLLFAGNILRQPLFTENNIHYR
VVGNLANTDIIMNNTFWIGVWPGIDDEQIEYIISQFKVYFS
>Mature_440_residues
SITNFNESSARIEILNKVKQFFKEKNSGQKFVHGETYIPASGKVVDEDDLANLIDASLDMWLTSGRYKDKFEREFAKFIG
VRYCSIVNSGSSANLAAVTALTSYTLGERRLRSGDEVITIAAGFPTTVGPLIQNGLIPVFVDVELGTYNIKVKHLEKAIS
NKTRAIVLAHTLGNPFNLEKVMELAKKHDLWVIEDNCDALGARYDGKYTGTFGHMSTFSFYPAHQITMGEGGAVVTDDEK
LYKIICSIRDWGRDCICPPGKDDFCGKRFTQQHGELPFGYDHKYVYSHFGYNLKVTDMQAAIGISQLKKLPQFVKKRREN
YKKLYEGLKQFEKYLILPKATDNSNPSWFGFTITIRENNNYDRNSLVEFLEKRNIGTRLLFAGNILRQPLFTENNIHYRV
VGNLANTDIIMNNTFWIGVWPGIDDEQIEYIISQFKVYFS

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=347, Percent_Identity=29.1066282420749, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI2367285, Length=268, Percent_Identity=30.5970149253731, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 50195; Mature: 50064

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITNFNESSARIEILNKVKQFFKEKNSGQKFVHGETYIPASGKVVDEDDLANLIDASLD
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCEECCCCCCEECHHHHHHHHHHHHH
MWLTSGRYKDKFEREFAKFIGVRYCSIVNSGSSANLAAVTALTSYTLGERRLRSGDEVIT
HHCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
IAAGFPTTVGPLIQNGLIPVFVDVELGTYNIKVKHLEKAISNKTRAIVLAHTLGNPFNLE
EECCCCCHHHHHHHCCCEEEEEEEEECEEEEEHHHHHHHHCCCCEEEEEEECCCCCCCHH
KVMELAKKHDLWVIEDNCDALGARYDGKYTGTFGHMSTFSFYPAHQITMGEGGAVVTDDE
HHHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCEEEECCCEEEEECCCCEEEECCH
KLYKIICSIRDWGRDCICPPGKDDFCGKRFTQQHGELPFGYDHKYVYSHFGYNLKVTDMQ
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEEEECHH
AAIGISQLKKLPQFVKKRRENYKKLYEGLKQFEKYLILPKATDNSNPSWFGFTITIRENN
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEEEEECCC
NYDRNSLVEFLEKRNIGTRLLFAGNILRQPLFTENNIHYRVVGNLANTDIIMNNTFWIGV
CCCHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCEEEEEEECCCCCEEEEECEEEEEE
WPGIDDEQIEYIISQFKVYFS
CCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SITNFNESSARIEILNKVKQFFKEKNSGQKFVHGETYIPASGKVVDEDDLANLIDASLD
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCEECCCCCCEECHHHHHHHHHHHHH
MWLTSGRYKDKFEREFAKFIGVRYCSIVNSGSSANLAAVTALTSYTLGERRLRSGDEVIT
HHCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
IAAGFPTTVGPLIQNGLIPVFVDVELGTYNIKVKHLEKAISNKTRAIVLAHTLGNPFNLE
EECCCCCHHHHHHHCCCEEEEEEEEECEEEEEHHHHHHHHCCCCEEEEEEECCCCCCCHH
KVMELAKKHDLWVIEDNCDALGARYDGKYTGTFGHMSTFSFYPAHQITMGEGGAVVTDDE
HHHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCEEEECCCEEEEECCCCEEEECCH
KLYKIICSIRDWGRDCICPPGKDDFCGKRFTQQHGELPFGYDHKYVYSHFGYNLKVTDMQ
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEEEECHH
AAIGISQLKKLPQFVKKRRENYKKLYEGLKQFEKYLILPKATDNSNPSWFGFTITIRENN
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEEEEECCC
NYDRNSLVEFLEKRNIGTRLLFAGNILRQPLFTENNIHYRVVGNLANTDIIMNNTFWIGV
CCCHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCEEEEEEECCCCCEEEEECEEEEEE
WPGIDDEQIEYIISQFKVYFS
CCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]