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The map label for this gene is nlpD [H]

Identifier: 187933752

GI number: 187933752

Start: 3765593

End: 3766780

Strand: Reverse

Name: nlpD [H]

Synonym: CLL_A3558

Alternate gene names: 187933752

Gene position: 3766780-3765593 (Counterclockwise)

Preceding gene: 187932555

Following gene: 187934606

Centisome position: 99.12

GC content: 27.36

Gene sequence:

>1188_bases
ATGAACACGAGAAAAATGAAAGTAATTAAATTTATAATCTGTCTTACAGTTATATTTAATTCAATAATTTTAATAGCAAA
TGCAAATTCTAATAAGGTATTTGAAGCATATGTTGATGGAAGACTAGTAGGTTATATTTATGACAAAAAGGAATTTAAGC
AAATCTATAGCGAGGTTAATGAGGAATTAAATAAAAGACTAGGTACTGATGTAGTACAAGATAAGAAAGTAAGATTTAAA
GGTAATAAAGAAAGTATAGAAAAATCTAGTGAAGAAAACATTAAAAATAATATAAAGAAAACTATTAACGATGAAGTTGA
TGCAAAGTTAATAAACATAAATAATAAAGATTATGGAATAGTATTTAATGAAAATGAAACTAGTGAGGTTTTTAAAGATT
TTATAATGAAAAATTTAAATAAGTTTAATATAAACTTAGATTCTGTACTTGATACTGAGATTAATGCTAATGTAAAATAT
TCAGATATTAAAGTTCCAATTTCAAATGTAAATGACATTGAACAAATAGTTGATAATATGATAAATGATGAGAATATAAA
GGTGAATGTTAAAATTAAAGAAGAAAAAGAAGTGACTGTAGCACCTAAAACACAAATAAAAAGAGATGATTCTATGTATA
TAGGAGAAAGCAATATTAAAGAAGGAGAATCTGGTAGTAAAAGAGTTACGGCTGAAGTTACTTATTGTAATGGAGAAAAG
CTAAATGAAAATGTGATTTCAGAATATGTAACAAAAGAAGCTAAAGATAAAATTGAATATAGAGGTAGCAAAACTCCAAT
TGGAGCTAAAGTAACATTTTTACAATATCCAACTAGAGGTAGATATATTACATCTAAATTTGGCCCACGATGGGGAAAGA
CTCATAATGGAATAGATATAGCAGGAAATACAGGGGACCCTGTTACAGCAGCTTTTGATGGAGTTATTGAAGATGCTGGA
GTCGTAAGTGGATATGGTAATATGATTAAAATAAAACATGAAGATGGGTTAGAAACACTTTATGGTCATTTAAGTTCGAT
TAATGTGAAGAAAGGGCAAGAAATAAAAAAAGGAGATGTTATTGGAGAAGTTGGTAGTACTGGAAGAAGTACAGGACCTC
ACTTACATTTTGAATTAAGATCAAAGGGAACTCCGATAAATCCAGAATTATATATTAAAAATCAATAA

Upstream 100 bases:

>100_bases
CATAGAAAACAACTAATACTTTAAACTAATGAATAAATTTAGTTGTAATAGGATAGATTATAAATTGTATTTTTAATTAT
AAAAGTGAAAGGATTAAATT

Downstream 100 bases:

>100_bases
ATAAAAGGATCTGTATCAACATTCTGCTAATATAGAGCCAAATAAAAAAATAATAAATACTAAAATATTTATAGTATTTA
TTATTTTTATAATTTAGGGC

Product: peptidase, M23/M37 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MNTRKMKVIKFIICLTVIFNSIILIANANSNKVFEAYVDGRLVGYIYDKKEFKQIYSEVNEELNKRLGTDVVQDKKVRFK
GNKESIEKSSEENIKNNIKKTINDEVDAKLININNKDYGIVFNENETSEVFKDFIMKNLNKFNINLDSVLDTEINANVKY
SDIKVPISNVNDIEQIVDNMINDENIKVNVKIKEEKEVTVAPKTQIKRDDSMYIGESNIKEGESGSKRVTAEVTYCNGEK
LNENVISEYVTKEAKDKIEYRGSKTPIGAKVTFLQYPTRGRYITSKFGPRWGKTHNGIDIAGNTGDPVTAAFDGVIEDAG
VVSGYGNMIKIKHEDGLETLYGHLSSINVKKGQEIKKGDVIGEVGSTGRSTGPHLHFELRSKGTPINPELYIKNQ

Sequences:

>Translated_395_residues
MNTRKMKVIKFIICLTVIFNSIILIANANSNKVFEAYVDGRLVGYIYDKKEFKQIYSEVNEELNKRLGTDVVQDKKVRFK
GNKESIEKSSEENIKNNIKKTINDEVDAKLININNKDYGIVFNENETSEVFKDFIMKNLNKFNINLDSVLDTEINANVKY
SDIKVPISNVNDIEQIVDNMINDENIKVNVKIKEEKEVTVAPKTQIKRDDSMYIGESNIKEGESGSKRVTAEVTYCNGEK
LNENVISEYVTKEAKDKIEYRGSKTPIGAKVTFLQYPTRGRYITSKFGPRWGKTHNGIDIAGNTGDPVTAAFDGVIEDAG
VVSGYGNMIKIKHEDGLETLYGHLSSINVKKGQEIKKGDVIGEVGSTGRSTGPHLHFELRSKGTPINPELYIKNQ
>Mature_395_residues
MNTRKMKVIKFIICLTVIFNSIILIANANSNKVFEAYVDGRLVGYIYDKKEFKQIYSEVNEELNKRLGTDVVQDKKVRFK
GNKESIEKSSEENIKNNIKKTINDEVDAKLININNKDYGIVFNENETSEVFKDFIMKNLNKFNINLDSVLDTEINANVKY
SDIKVPISNVNDIEQIVDNMINDENIKVNVKIKEEKEVTVAPKTQIKRDDSMYIGESNIKEGESGSKRVTAEVTYCNGEK
LNENVISEYVTKEAKDKIEYRGSKTPIGAKVTFLQYPTRGRYITSKFGPRWGKTHNGIDIAGNTGDPVTAAFDGVIEDAG
VVSGYGNMIKIKHEDGLETLYGHLSSINVKKGQEIKKGDVIGEVGSTGRSTGPHLHFELRSKGTPINPELYIKNQ

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=124, Percent_Identity=40.3225806451613, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789099, Length=123, Percent_Identity=41.4634146341463, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082174, Length=140, Percent_Identity=34.2857142857143, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87082297, Length=132, Percent_Identity=32.5757575757576, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 44454; Mature: 44454

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS51109 G5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRKMKVIKFIICLTVIFNSIILIANANSNKVFEAYVDGRLVGYIYDKKEFKQIYSEVN
CCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEECCEEEEEEECHHHHHHHHHHHH
EELNKRLGTDVVQDKKVRFKGNKESIEKSSEENIKNNIKKTINDEVDAKLININNKDYGI
HHHHHHHCCCHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEE
VFNENETSEVFKDFIMKNLNKFNINLDSVLDTEINANVKYSDIKVPISNVNDIEQIVDNM
EECCCCHHHHHHHHHHHCCCEEEEEHHHEECCCCCCCEEEEEEEEECCCCHHHHHHHHHH
INDENIKVNVKIKEEKEVTVAPKTQIKRDDSMYIGESNIKEGESGSKRVTAEVTYCNGEK
CCCCCEEEEEEEECCCCEEECCCHHCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCC
LNENVISEYVTKEAKDKIEYRGSKTPIGAKVTFLQYPTRGRYITSKFGPRWGKTHNGIDI
CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCEEE
AGNTGDPVTAAFDGVIEDAGVVSGYGNMIKIKHEDGLETLYGHLSSINVKKGQEIKKGDV
ECCCCCCHHHHHHHHHHCCCEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCE
IGEVGSTGRSTGPHLHFELRSKGTPINPELYIKNQ
EECCCCCCCCCCCEEEEEEECCCCCCCCEEEEECC
>Mature Secondary Structure
MNTRKMKVIKFIICLTVIFNSIILIANANSNKVFEAYVDGRLVGYIYDKKEFKQIYSEVN
CCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEECCEEEEEEECHHHHHHHHHHHH
EELNKRLGTDVVQDKKVRFKGNKESIEKSSEENIKNNIKKTINDEVDAKLININNKDYGI
HHHHHHHCCCHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEE
VFNENETSEVFKDFIMKNLNKFNINLDSVLDTEINANVKYSDIKVPISNVNDIEQIVDNM
EECCCCHHHHHHHHHHHCCCEEEEEHHHEECCCCCCCEEEEEEEEECCCCHHHHHHHHHH
INDENIKVNVKIKEEKEVTVAPKTQIKRDDSMYIGESNIKEGESGSKRVTAEVTYCNGEK
CCCCCEEEEEEEECCCCEEECCCHHCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCC
LNENVISEYVTKEAKDKIEYRGSKTPIGAKVTFLQYPTRGRYITSKFGPRWGKTHNGIDI
CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCEEE
AGNTGDPVTAAFDGVIEDAGVVSGYGNMIKIKHEDGLETLYGHLSSINVKKGQEIKKGDV
ECCCCCCHHHHHHHHHHCCCEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCE
IGEVGSTGRSTGPHLHFELRSKGTPINPELYIKNQ
EECCCCCCCCCCCEEEEEEECCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]