Click here to switch to the map view.

The map label for this gene is 187933642

Identifier: 187933642

GI number: 187933642

Start: 2169011

End: 2169550

Strand: Reverse

Name: 187933642

Synonym: CLL_A2075

Alternate gene names: NA

Gene position: 2169550-2169011 (Counterclockwise)

Preceding gene: 187935201

Following gene: 187933050

Centisome position: 57.09

GC content: 27.78

Gene sequence:

>540_bases
ATGCTAGATGACAAGCTTATTAATAAGATTAAAGAGCGAAAAAATGAAGGTTTAGATATGCTTATTGATGAATATGGCAA
GCTTTGCTATGGAGTTATTTCATCTGTACTAGCACCTAATAATATGAATGAAAGTATTGATGAGTGCTTTGATGATGTTC
TGATTACTGTTTGGTACAAAATTGAATTGTTTGAAGCAGTAAAGGGAAGTTTGAGAAATTGGATTATATCAGTATGCAAG
TTTAAAGCATTAGATTATCTTAGAAAGAAGAGAGAAAATTTAGAGATTAATAATGAAAAAATAGAAGATGAAATTAATAT
TGAAAATCACATTATAAAAGAAGAGGAAAAAGAAGAACTTTTAAAGGCCATTGAAAAACTAGGTGATATGGATAGAGATA
TATTTAAATTAAGATTTATAGAAGAGAGGGATATTGAGTATATATCAAATAAATTAGGCATTGAAAAAGGAAGTATTTAC
ACTAGAATTTCAAGAGGTAAAACAAAACTAAGAAAGTTGATGGAGGGGTATTATGAGTAA

Upstream 100 bases:

>100_bases
CCTTATTTTTATAAAAATTTGATAAATTTAAAATATATTGTAAGAAGATATAGGATTGGTACGTATAGAGGATGAGAAAG
CTTAAGGGGGGGAGATATTT

Downstream 100 bases:

>100_bases
TTATATTGAACTTAACTTAGATGATTTAATGTATGAAGAATATAGTGATGAAGAAGTTCAAAAATTTGAAAATAAGGGAA
TGAACTTTTTTGAGAGAATA

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70factor; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70 Factor; RNA Polymerase

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MLDDKLINKIKERKNEGLDMLIDEYGKLCYGVISSVLAPNNMNESIDECFDDVLITVWYKIELFEAVKGSLRNWIISVCK
FKALDYLRKKRENLEINNEKIEDEINIENHIIKEEEKEELLKAIEKLGDMDRDIFKLRFIEERDIEYISNKLGIEKGSIY
TRISRGKTKLRKLMEGYYE

Sequences:

>Translated_179_residues
MLDDKLINKIKERKNEGLDMLIDEYGKLCYGVISSVLAPNNMNESIDECFDDVLITVWYKIELFEAVKGSLRNWIISVCK
FKALDYLRKKRENLEINNEKIEDEINIENHIIKEEEKEELLKAIEKLGDMDRDIFKLRFIEERDIEYISNKLGIEKGSIY
TRISRGKTKLRKLMEGYYE
>Mature_179_residues
MLDDKLINKIKERKNEGLDMLIDEYGKLCYGVISSVLAPNNMNESIDECFDDVLITVWYKIELFEAVKGSLRNWIISVCK
FKALDYLRKKRENLEINNEKIEDEINIENHIIKEEEKEELLKAIEKLGDMDRDIFKLRFIEERDIEYISNKLGIEKGSIY
TRISRGKTKLRKLMEGYYE

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21252; Mature: 21252

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDKLINKIKERKNEGLDMLIDEYGKLCYGVISSVLAPNNMNESIDECFDDVLITVWYK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
IELFEAVKGSLRNWIISVCKFKALDYLRKKRENLEINNEKIEDEINIENHIIKEEEKEEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHCHHHHHHH
LKAIEKLGDMDRDIFKLRFIEERDIEYISNKLGIEKGSIYTRISRGKTKLRKLMEGYYE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDDKLINKIKERKNEGLDMLIDEYGKLCYGVISSVLAPNNMNESIDECFDDVLITVWYK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
IELFEAVKGSLRNWIISVCKFKALDYLRKKRENLEINNEKIEDEINIENHIIKEEEKEEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHCHHHHHHH
LKAIEKLGDMDRDIFKLRFIEERDIEYISNKLGIEKGSIYTRISRGKTKLRKLMEGYYE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA