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The map label for this gene is araC [C]

Identifier: 187933561

GI number: 187933561

Start: 2201731

End: 2202468

Strand: Reverse

Name: araC [C]

Synonym: CLL_A2106

Alternate gene names: 187933561

Gene position: 2202468-2201731 (Counterclockwise)

Preceding gene: 187932549

Following gene: 187932789

Centisome position: 57.95

GC content: 28.73

Gene sequence:

>738_bases
ATGCTTAATATAATGATTGTTGATGATGAAATTTTGGAAAGGCAAGCTTTAAAGATGATTATAAATAACTCAGATAGTGG
AAGGGTTATAGCAGAAGCGTGCAATGGGAGAGAGGCTATAGAATTAGATAGGAAATTTAATCCAGACGTTATAATAATAG
ATGTTAAAATGCCTGGAATAGATGGGATAAAAGCATCGCAAATTATAAAAGAACAAAACAAAAATAAGATTATTATAATG
ATAACAGCTTATGATGATTTTGAATTGGTACATAAAGCATTGTTGTTAGGTGTGAACGATTATATTTTAAAACCAATAAA
ACCAAGTGAATTAATAGATGCCATAAATAATATCTTTGTTAATTTAAAAATTAACAAAGATACTTATGTGGAAAAATCAG
TAAATGAACTTAAAGAAGTACCTATTAAAGCGGCAATAGAATATATACATAACAATTTTGATGAAAAGGTTAGCTTAGAA
CAAATGGCATCTATATGTAACTTAAGTCCTTGTTATTTTAGTAAGGTATTTAAGAAAGCAGTTGGAGTTAATTTTGTTTC
ATATGTAAATGACACTAAAATAAACAAGGCGAAAGAGCTACTTGAAAATACAGATATACCAGTACTTAATGTGGCTTTAG
ATTTAGGATTTGATGATTGCGGGTATTTTATAAGGGTATTCAAAAAATCCCAAGGAGTTACCCCTAAAAAGTATAGAGAA
GTACATAAGGCTCAGTAA

Upstream 100 bases:

>100_bases
TTACGGGGATGAATATAAAATAGATATAACTAGCAAAATAAGAGTAGGAACTTCAGTAAAAATAACTATTAAGAAAGAAG
TTTAGCTAGGAGTTGAATAA

Downstream 100 bases:

>100_bases
TTCTATAGTAAACTACTTTATTGATAATTATGATAAAGCAATTTTTTTACGTTTTGCACAAAAAATCTCTTTTAAAAGTT
AAAAAAGGGATTTTTTTGTT

Product: DNA-bindng response regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLNIMIVDDEILERQALKMIINNSDSGRVIAEACNGREAIELDRKFNPDVIIIDVKMPGIDGIKASQIIKEQNKNKIIIM
ITAYDDFELVHKALLLGVNDYILKPIKPSELIDAINNIFVNLKINKDTYVEKSVNELKEVPIKAAIEYIHNNFDEKVSLE
QMASICNLSPCYFSKVFKKAVGVNFVSYVNDTKINKAKELLENTDIPVLNVALDLGFDDCGYFIRVFKKSQGVTPKKYRE
VHKAQ

Sequences:

>Translated_245_residues
MLNIMIVDDEILERQALKMIINNSDSGRVIAEACNGREAIELDRKFNPDVIIIDVKMPGIDGIKASQIIKEQNKNKIIIM
ITAYDDFELVHKALLLGVNDYILKPIKPSELIDAINNIFVNLKINKDTYVEKSVNELKEVPIKAAIEYIHNNFDEKVSLE
QMASICNLSPCYFSKVFKKAVGVNFVSYVNDTKINKAKELLENTDIPVLNVALDLGFDDCGYFIRVFKKSQGVTPKKYRE
VHKAQ
>Mature_245_residues
MLNIMIVDDEILERQALKMIINNSDSGRVIAEACNGREAIELDRKFNPDVIIIDVKMPGIDGIKASQIIKEQNKNKIIIM
ITAYDDFELVHKALLLGVNDYILKPIKPSELIDAINNIFVNLKINKDTYVEKSVNELKEVPIKAAIEYIHNNFDEKVSLE
QMASICNLSPCYFSKVFKKAVGVNFVSYVNDTKINKAKELLENTDIPVLNVALDLGFDDCGYFIRVFKKSQGVTPKKYRE
VHKAQ

Specific function: Probable member of the two-component regulatory system SE_0166/SE_0165 [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=132, Percent_Identity=32.5757575757576, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788222, Length=119, Percent_Identity=31.0924369747899, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790391, Length=104, Percent_Identity=33.6538461538462, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788725, Length=91, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788550, Length=109, Percent_Identity=36.697247706422, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87082052, Length=111, Percent_Identity=31.5315315315315, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787487, Length=105, Percent_Identity=35.2380952380952, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790559, Length=119, Percent_Identity=26.0504201680672, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788521, Length=177, Percent_Identity=27.1186440677966, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787987, Length=106, Percent_Identity=29.2452830188679, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00165 HTH_AraC; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27796; Mature: 27796

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIMIVDDEILERQALKMIINNSDSGRVIAEACNGREAIELDRKFNPDVIIIDVKMPGI
CEEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCEEEEEEECCCC
DGIKASQIIKEQNKNKIIIMITAYDDFELVHKALLLGVNDYILKPIKPSELIDAINNIFV
CCCHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCEEE
NLKINKDTYVEKSVNELKEVPIKAAIEYIHNNFDEKVSLEQMASICNLSPCYFSKVFKKA
EEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
VGVNFVSYVNDTKINKAKELLENTDIPVLNVALDLGFDDCGYFIRVFKKSQGVTPKKYRE
HCCHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHH
VHKAQ
HHCCC
>Mature Secondary Structure
MLNIMIVDDEILERQALKMIINNSDSGRVIAEACNGREAIELDRKFNPDVIIIDVKMPGI
CEEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCEEEEEEECCCC
DGIKASQIIKEQNKNKIIIMITAYDDFELVHKALLLGVNDYILKPIKPSELIDAINNIFV
CCCHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCEEE
NLKINKDTYVEKSVNELKEVPIKAAIEYIHNNFDEKVSLEQMASICNLSPCYFSKVFKKA
EEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
VGVNFVSYVNDTKINKAKELLENTDIPVLNVALDLGFDDCGYFIRVFKKSQGVTPKKYRE
HCCHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHH
VHKAQ
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]