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The map label for this gene is yqxC [H]

Identifier: 187933335

GI number: 187933335

Start: 2491718

End: 2492527

Strand: Reverse

Name: yqxC [H]

Synonym: CLL_A2400

Alternate gene names: 187933335

Gene position: 2492527-2491718 (Counterclockwise)

Preceding gene: 187934347

Following gene: 187933816

Centisome position: 65.59

GC content: 32.22

Gene sequence:

>810_bases
ATGGCAGAAAAAAAGGAAAGACTTGATATACTTTTAGTAGAAAAGGGTATAATTACTTCTAGGGATAGAGCTAAGGCTTG
TATTATGGAAGGTAAAGTATTTGTTGACGGTCAAAGAGTTGATAAAGCAGGGGAAAAAGTAAGCATAATTGCTAACATTG
AATATAAAGGCGCAAAACTTAAATATGTAAGTAGAGGCGGACTTAAATTAGAGAAAGCTATGAAGTCATATGATATATCT
TTAGAAGATAAAGTATGTATGGATATAGGGGCATCTACTGGGGGATTTACTGACTGTATGCTTCAAAATGGAGCCCAAAA
AGTGTATTCAGTAGATGTAGGATATGGTCAGTTTGCATGGAAATTAAGAACTGATGAAAGAGTAGTATGCATGGAAAGAA
CTAATATCAGATATGTTACATTAGAAGATATTGGTGAACCTTTAGATTTTGCATCAATAGATGTATCTTTTATATCTTTA
AAAAAGATAATGCCAGCAACGTTAGGACTTTTAAAAGATACTGGTGAAGTTGTGGCCTTAATAAAACCACAATTTGAAGC
AGGTCGTGAAAAAGTTGGTAAAAAAGGTGTTGTTAGAGAAATTAGCACACATAAAGAAGTAGTATATGGAATAATTGAAT
TCCTTAAAAATGAAAATTTAAATATCCTAGGGGTAGGATATTCTCCAATAAAAGGTCCAGAAGGAAATAGAGAATACTTA
GTTTATTTTACAAAAGACGCTGAGAAAGAAAGTAATTTTGAACTTGATGATGTAGAAAGGGTTGTAGAGGAATCTCATAA
AGAACTTTAG

Upstream 100 bases:

>100_bases
CAAGGAAATGTAGAAATACTTTATAAAACATATGGATTAGATCCTGTAAGTATAAGTAATACAATCCTTAAACTTTATAA
TTAAAAGGAGAATATAATAT

Downstream 100 bases:

>100_bases
AGATTTTCGGAGGGGTTATGAAAAATATAGGTATTGCGATAAATCCATCAAAAGACTATAAAAATACAATTTTAAATATG
GTAAAAGAAAAAATTAAGAA

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MAEKKERLDILLVEKGIITSRDRAKACIMEGKVFVDGQRVDKAGEKVSIIANIEYKGAKLKYVSRGGLKLEKAMKSYDIS
LEDKVCMDIGASTGGFTDCMLQNGAQKVYSVDVGYGQFAWKLRTDERVVCMERTNIRYVTLEDIGEPLDFASIDVSFISL
KKIMPATLGLLKDTGEVVALIKPQFEAGREKVGKKGVVREISTHKEVVYGIIEFLKNENLNILGVGYSPIKGPEGNREYL
VYFTKDAEKESNFELDDVERVVEESHKEL

Sequences:

>Translated_269_residues
MAEKKERLDILLVEKGIITSRDRAKACIMEGKVFVDGQRVDKAGEKVSIIANIEYKGAKLKYVSRGGLKLEKAMKSYDIS
LEDKVCMDIGASTGGFTDCMLQNGAQKVYSVDVGYGQFAWKLRTDERVVCMERTNIRYVTLEDIGEPLDFASIDVSFISL
KKIMPATLGLLKDTGEVVALIKPQFEAGREKVGKKGVVREISTHKEVVYGIIEFLKNENLNILGVGYSPIKGPEGNREYL
VYFTKDAEKESNFELDDVERVVEESHKEL
>Mature_268_residues
AEKKERLDILLVEKGIITSRDRAKACIMEGKVFVDGQRVDKAGEKVSIIANIEYKGAKLKYVSRGGLKLEKAMKSYDISL
EDKVCMDIGASTGGFTDCMLQNGAQKVYSVDVGYGQFAWKLRTDERVVCMERTNIRYVTLEDIGEPLDFASIDVSFISLK
KIMPATLGLLKDTGEVVALIKPQFEAGREKVGKKGVVREISTHKEVVYGIIEFLKNENLNILGVGYSPIKGPEGNREYLV
YFTKDAEKESNFELDDVERVVEESHKEL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30120; Mature: 29989

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKKERLDILLVEKGIITSRDRAKACIMEGKVFVDGQRVDKAGEKVSIIANIEYKGAKL
CCCCHHCCEEEEEECCCCCCCCHHHEEEECCEEEECCCHHCCCCCEEEEEEEEEECCCEE
KYVSRGGLKLEKAMKSYDISLEDKVCMDIGASTGGFTDCMLQNGAQKVYSVDVGYGQFAW
EEEECCCCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHCCCCEEEEEECCCCEEEE
KLRTDERVVCMERTNIRYVTLEDIGEPLDFASIDVSFISLKKIMPATLGLLKDTGEVVAL
EEECCCEEEEEECCCEEEEEHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
IKPQFEAGREKVGKKGVVREISTHKEVVYGIIEFLKNENLNILGVGYSPIKGPEGNREYL
ECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEE
VYFTKDAEKESNFELDDVERVVEESHKEL
EEEECCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEKKERLDILLVEKGIITSRDRAKACIMEGKVFVDGQRVDKAGEKVSIIANIEYKGAKL
CCCHHCCEEEEEECCCCCCCCHHHEEEECCEEEECCCHHCCCCCEEEEEEEEEECCCEE
KYVSRGGLKLEKAMKSYDISLEDKVCMDIGASTGGFTDCMLQNGAQKVYSVDVGYGQFAW
EEEECCCCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHCCCCEEEEEECCCCEEEE
KLRTDERVVCMERTNIRYVTLEDIGEPLDFASIDVSFISLKKIMPATLGLLKDTGEVVAL
EEECCCEEEEEECCCEEEEEHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
IKPQFEAGREKVGKKGVVREISTHKEVVYGIIEFLKNENLNILGVGYSPIKGPEGNREYL
ECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEE
VYFTKDAEKESNFELDDVERVVEESHKEL
EEEECCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]