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The map label for this gene is psd [H]

Identifier: 187932700

GI number: 187932700

Start: 48363

End: 49253

Strand: Reverse

Name: psd [H]

Synonym: CLL_A0050

Alternate gene names: 187932700

Gene position: 49253-48363 (Counterclockwise)

Preceding gene: 187932894

Following gene: 187933844

Centisome position: 1.3

GC content: 27.72

Gene sequence:

>891_bases
ATGATTAAAGTATATAACAGAATTACTAATGAATATGAAGAAGAAAACGTGGCAGGTAAAAAGTTCATTAAGTGGACCTA
TGAAACACCCGTTGGAAAAAGCATAACAGAATTAATTGCTAAGAGAAAGATTTTTTCAAAATTTTATGGTAAATTTTGTG
ATACAAAATGCAGTGCAAAAAAAATACCTGACTTTGTTAGAGACTTTAATATTGATATGAATATTGCAGAAAAAAATATT
TCTGAATTTAATTCATTTAATGACTTCTTTGTTAGAAATTTGACTTCTACTTCAAGGCCTATAGATTACAATGAAGATAT
TTTTATTTCTCCAGGAGATGGGAGAATTACTGTTTACGATAATATAGACTTAGATAATATTGTTCAAGTAAAAGGTTTAA
CTTATAGTTTAAGAGAATTAATAAAAAATGATGAAATATCAGAAAGATATAAAGATGGTATTTGTATAATATTAAGGCTA
TGTCCTACGGACTATCATAGGTTTCACTTTGTAGACTCTGGTATACCTTGTGAAACACATAAAATTAAAGGCCATTACTA
TTCTGTAAATCCTATAGCTCTTAATTCAATCCCAAAATTATTTTGTGAAAATAAAAGAGAATGGTGCATATTTAAATCAG
AAAACTTTGGGGATGTTCTAACTGTAGAAGTAGGTGCTACTTGTGTTGGATCAATAATTCAAACATATGAGCCTAACAAA
AAAGCAAAAAAAGGCGATGAAAAAGGATACTTTAAGTTTGGTGGATCTACAACTATATTATTTTTAGAAAAAGATAAAGT
AAAAATAGATGATGATATTTTAGAACAATCAAAGCAAGGATATGAATGTAAGGTCTTATTGGGAGAAACTATTGGAACTA
AGGTTTTATAA

Upstream 100 bases:

>100_bases
TTATTACTTTTTACTTTCATTTTTTGATATTTAAAATATATATGTTAGAATCAGTATATAATATATAAAGATATTTTTAA
ATTAATGAAAAGAGGAATTT

Downstream 100 bases:

>100_bases
AAATACTACTACTTTAATTTATTATTATGAAAGTGTATTTTATTATGTTGCAAGAATTTCGTTTATTATAAATAAACTTT
TCAAATTTATAATAAACAAA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MIKVYNRITNEYEEENVAGKKFIKWTYETPVGKSITELIAKRKIFSKFYGKFCDTKCSAKKIPDFVRDFNIDMNIAEKNI
SEFNSFNDFFVRNLTSTSRPIDYNEDIFISPGDGRITVYDNIDLDNIVQVKGLTYSLRELIKNDEISERYKDGICIILRL
CPTDYHRFHFVDSGIPCETHKIKGHYYSVNPIALNSIPKLFCENKREWCIFKSENFGDVLTVEVGATCVGSIIQTYEPNK
KAKKGDEKGYFKFGGSTTILFLEKDKVKIDDDILEQSKQGYECKVLLGETIGTKVL

Sequences:

>Translated_296_residues
MIKVYNRITNEYEEENVAGKKFIKWTYETPVGKSITELIAKRKIFSKFYGKFCDTKCSAKKIPDFVRDFNIDMNIAEKNI
SEFNSFNDFFVRNLTSTSRPIDYNEDIFISPGDGRITVYDNIDLDNIVQVKGLTYSLRELIKNDEISERYKDGICIILRL
CPTDYHRFHFVDSGIPCETHKIKGHYYSVNPIALNSIPKLFCENKREWCIFKSENFGDVLTVEVGATCVGSIIQTYEPNK
KAKKGDEKGYFKFGGSTTILFLEKDKVKIDDDILEQSKQGYECKVLLGETIGTKVL
>Mature_296_residues
MIKVYNRITNEYEEENVAGKKFIKWTYETPVGKSITELIAKRKIFSKFYGKFCDTKCSAKKIPDFVRDFNIDMNIAEKNI
SEFNSFNDFFVRNLTSTSRPIDYNEDIFISPGDGRITVYDNIDLDNIVQVKGLTYSLRELIKNDEISERYKDGICIILRL
CPTDYHRFHFVDSGIPCETHKIKGHYYSVNPIALNSIPKLFCENKREWCIFKSENFGDVLTVEVGATCVGSIIQTYEPNK
KAKKGDEKGYFKFGGSTTILFLEKDKVKIDDDILEQSKQGYECKVLLGETIGTKVL

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=320, Percent_Identity=24.6875, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1790604, Length=247, Percent_Identity=33.6032388663968, Blast_Score=125, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI71980843, Length=227, Percent_Identity=25.5506607929515, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71980840, Length=227, Percent_Identity=25.5506607929515, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321609, Length=268, Percent_Identity=36.1940298507463, Blast_Score=151, Evalue=1e-37,
Organism=Drosophila melanogaster, GI24649526, Length=304, Percent_Identity=25.9868421052632, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24649528, Length=304, Percent_Identity=25.9868421052632, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24649524, Length=304, Percent_Identity=25.9868421052632, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 34097; Mature: 34097

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVYNRITNEYEEENVAGKKFIKWTYETPVGKSITELIAKRKIFSKFYGKFCDTKCSAK
CEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
KIPDFVRDFNIDMNIAEKNISEFNSFNDFFVRNLTSTSRPIDYNEDIFISPGDGRITVYD
HCHHHHHHCCCCEEHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEE
NIDLDNIVQVKGLTYSLRELIKNDEISERYKDGICIILRLCPTDYHRFHFVDSGIPCETH
CCCCCCEEEECCCHHHHHHHHCCCCHHHHHCCCEEEEEEECCCCCCEEEEECCCCCCCCE
KIKGHYYSVNPIALNSIPKLFCENKREWCIFKSENFGDVLTVEVGATCVGSIIQTYEPNK
EECCEEEEECCEEHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHCCCCC
KAKKGDEKGYFKFGGSTTILFLEKDKVKIDDDILEQSKQGYECKVLLGETIGTKVL
HHCCCCCCCEEEECCCEEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MIKVYNRITNEYEEENVAGKKFIKWTYETPVGKSITELIAKRKIFSKFYGKFCDTKCSAK
CEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
KIPDFVRDFNIDMNIAEKNISEFNSFNDFFVRNLTSTSRPIDYNEDIFISPGDGRITVYD
HCHHHHHHCCCCEEHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEE
NIDLDNIVQVKGLTYSLRELIKNDEISERYKDGICIILRLCPTDYHRFHFVDSGIPCETH
CCCCCCEEEECCCHHHHHHHHCCCCHHHHHCCCEEEEEEECCCCCCEEEEECCCCCCCCE
KIKGHYYSVNPIALNSIPKLFCENKREWCIFKSENFGDVLTVEVGATCVGSIIQTYEPNK
EECCEEEEECCEEHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHCCCCC
KAKKGDEKGYFKFGGSTTILFLEKDKVKIDDDILEQSKQGYECKVLLGETIGTKVL
HHCCCCCCCEEEECCCEEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA