| Definition | Borrelia hermsii DAH chromosome, complete genome. |
|---|---|
| Accession | NC_010673 |
| Length | 922,307 |
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The map label for this gene is omp85 [H]
Identifier: 187918648
GI number: 187918648
Start: 849237
End: 851696
Strand: Direct
Name: omp85 [H]
Synonym: BH0795
Alternate gene names: 187918648
Gene position: 849237-851696 (Clockwise)
Preceding gene: 187918647
Following gene: 187918649
Centisome position: 92.08
GC content: 29.96
Gene sequence:
>2460_bases GTGCAGCTATTTAAAATCTTTATTTTTGTGGTTTTCATCTTGTTTGTATTTAATTTAGGATATTCTCAAGAGAATTATAA GGACAAGATGATAAAAAGTATTGACTTTAATGGGCTTAAGAATATAAAAGAAAATGACCTTAAATTTATTTTGAATGTTT ATTTGGGACAAACTTATTCCGATGAACTTTTTGATAGGTTGCAAGTTGACCTTTATGCTCTTGATTATTTTGAGGGACTT ATTCGACCTGAGTTTAGAATAGAAGATGATAAACTTGTAATTACATTTTTTGTGAAGGAAAAGTCTTTAGTAAAAACTGT TACTTTTATTGATGATAGTGGGATTTTTTGGAATAGTGAACTGCGTGACAAATCAGATGTTAAGGTAAAAGAGGCTTTAA ATCTTTCAAGAATTAAAAAAAGTGTTGTTAAATTTGAAGAAATGTACAAAGATGCCGGGTATCTTGATGTTACTGTTGAA TTTGATATTAAAGAGGAAAATAGCTTAGTAGATATTGTGTTTAAAATTAATGCTGGTCCTAAGTATGTTGTTAAAGAGGT TTCTTTTGAGGGAAATTTGAATTTTAAGAGCCGTATTCTTAGAAAATATTTAGTGTCAAAACCCTCATCTTTATTTGCTG ATGGCAAGTATTTAAAGTCAAATGTTGATAAAGATAAAATGCGACTTGAGTCTTATTATAAAAATAATGGATATATTAAT GCCAAGGTTGTAAATAATACTGTAGATATACGAATTCCTAGTGATTCTAAAAAAATGGAGAGAGAGGTTTACTTAAAATA TTTTATTTCAGAGGGTAATATTTTTAAATTTGGTAAGTTTGAAATTACTGGTAATTTGGTTTTTAAATTAGAAGAATTGC AATCCCTAATTACTTTTAGGGAAGGAGATATTTTTGATGATTCAAGATTTGAGCAAGATTTTGCAAAAATTAGGGATAAG TATTATTCCGATGGTTATATCTTTACAGAGATTGTGCCTTCTCGAACGATAAGAGATGAATTTGTAGATTATTCTATTAA TATTTTAGAAAAAGAGAAAGCTCATATTGAGTCTATTACTGTCTCAGGTAATAAGAAAACAGCTTCCCATGTAATACTTA GAGAAATTCCACTAATGGAGGGAGATGTTTTTAGTTTGGAAAAACTTCGGATGGGAATGCTTAATTTGCAAAGACTTGGT TATTTTGGAAATGTTATACCCGATGTTGTTCCAAGTAGTATTGAGGGTTTAATGAAAATAAATTTTGTTGTCGAAGAGCG GGAGACAGCAAGCTTGAGATTTGGTATGAATTTTGGTGGGGTTAGTAATTCTTGGCTTCCATTTTCAGTTTTTGGACAGT GGGAACAATCTAATTTTCTAGGTGAAGGGTATGCTCTTTCTGCAAGACTTAATCTTGCTTTCTCAGAGCAAAGCTTTAGG TTGATGTTTGAAGATAATTGGTTTATGCAGACTAGATGGACTCTTGGGGGATTTATTGATTTCTCACATTCTATAAATAC AGCTTATCAGGATATTAATGGGCCTATATTTATAGGCAAAAAGGAAGTTCCAGATCCTTTTGTAAGTTGGGAAGCATATA ATAATGATAAAAATTTTTCGGATTTTAATATTATGAATTATTCTTTAGCTAAATTTAGTATTAGTGGGTTTACTGGCTAT ACTTTTTCTAATTATCTTGGAAAGCAGTCATTTGTTGGAACTGTTCAAACTGCTTTGAAATATGTGTATTATGATAATAA TGTTAATAGACCTTCAAATTACTATTTGAGGGATAATTATAATACTATTAGATTTGAAAATTCTTTTGGTATTAGTGTTG CGTGGGATACAAGAAATTCCCAGTCTTTATCTAATAATGGTTTTTTGCTTAAGCAACAATTTGATTTTTTTGGGGGGTTT TTACTTGGACAGAGTCATTTTTCAAAATCCACAACGACTTTTGAGAGATATTTTTCTCTTTTAGGGTATCAGGATGTTTT TACTCCATATTTTGATTTAATTTTAACTTTAAGAAGTGTTTATTCAAATGTTTTGCCGCCACTTGGAAATGGTTTTGAAA TAGAAGTACAGCCACATCATCTTATAGTTATTAGTGAAAACTTTATGATTGCAAGAGGATGGGGCACTTTGAGCAATATT TATAGTTCGTTTGTAAATACTCTTCAGATATCAATGCCTTTGATTAAGAATATTTTGGTTTGGGATATTTTATTTTTAGA TATGGCTTCATATTCTCTAGAAGGGCAAGAGAATTCTTTATTTGTTCCTTTTAGTAATTTTATTTTTAGTTGGGGCTTTG GAATTAGAAGTGTTCTGCCTCAAATGCCTTTGTCTTTTGTAATAGCTTATCCATTTTATTTCAGTAATGAAGGCGTTAAT AGATATTATAATTATTCTGGAGGGTTTAAATTTTTCTTAGCCATTGATATGAGATACTGA
Upstream 100 bases:
>100_bases ATATTTTTGATTATAATTTTATGAAATATGGTCATGGCATAGGAAATCAAATATCTATTTTTTGGAAATTTAAATACTGA AGCTATGTAAGGGGTTTAGG
Downstream 100 bases:
>100_bases TATAATTTAGTTAGCTTTTCATAAGGAGGGTTGTTATGGTTTCCATGATGCTTTTATTTGCATGTTTTTTTCCATTAAAT CTTTTTTCAGTTAATGTTAC
Product: outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 819; Mature: 819
Protein sequence:
>819_residues MQLFKIFIFVVFILFVFNLGYSQENYKDKMIKSIDFNGLKNIKENDLKFILNVYLGQTYSDELFDRLQVDLYALDYFEGL IRPEFRIEDDKLVITFFVKEKSLVKTVTFIDDSGIFWNSELRDKSDVKVKEALNLSRIKKSVVKFEEMYKDAGYLDVTVE FDIKEENSLVDIVFKINAGPKYVVKEVSFEGNLNFKSRILRKYLVSKPSSLFADGKYLKSNVDKDKMRLESYYKNNGYIN AKVVNNTVDIRIPSDSKKMEREVYLKYFISEGNIFKFGKFEITGNLVFKLEELQSLITFREGDIFDDSRFEQDFAKIRDK YYSDGYIFTEIVPSRTIRDEFVDYSINILEKEKAHIESITVSGNKKTASHVILREIPLMEGDVFSLEKLRMGMLNLQRLG YFGNVIPDVVPSSIEGLMKINFVVEERETASLRFGMNFGGVSNSWLPFSVFGQWEQSNFLGEGYALSARLNLAFSEQSFR LMFEDNWFMQTRWTLGGFIDFSHSINTAYQDINGPIFIGKKEVPDPFVSWEAYNNDKNFSDFNIMNYSLAKFSISGFTGY TFSNYLGKQSFVGTVQTALKYVYYDNNVNRPSNYYLRDNYNTIRFENSFGISVAWDTRNSQSLSNNGFLLKQQFDFFGGF LLGQSHFSKSTTTFERYFSLLGYQDVFTPYFDLILTLRSVYSNVLPPLGNGFEIEVQPHHLIVISENFMIARGWGTLSNI YSSFVNTLQISMPLIKNILVWDILFLDMASYSLEGQENSLFVPFSNFIFSWGFGIRSVLPQMPLSFVIAYPFYFSNEGVN RYYNYSGGFKFFLAIDMRY
Sequences:
>Translated_819_residues MQLFKIFIFVVFILFVFNLGYSQENYKDKMIKSIDFNGLKNIKENDLKFILNVYLGQTYSDELFDRLQVDLYALDYFEGL IRPEFRIEDDKLVITFFVKEKSLVKTVTFIDDSGIFWNSELRDKSDVKVKEALNLSRIKKSVVKFEEMYKDAGYLDVTVE FDIKEENSLVDIVFKINAGPKYVVKEVSFEGNLNFKSRILRKYLVSKPSSLFADGKYLKSNVDKDKMRLESYYKNNGYIN AKVVNNTVDIRIPSDSKKMEREVYLKYFISEGNIFKFGKFEITGNLVFKLEELQSLITFREGDIFDDSRFEQDFAKIRDK YYSDGYIFTEIVPSRTIRDEFVDYSINILEKEKAHIESITVSGNKKTASHVILREIPLMEGDVFSLEKLRMGMLNLQRLG YFGNVIPDVVPSSIEGLMKINFVVEERETASLRFGMNFGGVSNSWLPFSVFGQWEQSNFLGEGYALSARLNLAFSEQSFR LMFEDNWFMQTRWTLGGFIDFSHSINTAYQDINGPIFIGKKEVPDPFVSWEAYNNDKNFSDFNIMNYSLAKFSISGFTGY TFSNYLGKQSFVGTVQTALKYVYYDNNVNRPSNYYLRDNYNTIRFENSFGISVAWDTRNSQSLSNNGFLLKQQFDFFGGF LLGQSHFSKSTTTFERYFSLLGYQDVFTPYFDLILTLRSVYSNVLPPLGNGFEIEVQPHHLIVISENFMIARGWGTLSNI YSSFVNTLQISMPLIKNILVWDILFLDMASYSLEGQENSLFVPFSNFIFSWGFGIRSVLPQMPLSFVIAYPFYFSNEGVN RYYNYSGGFKFFLAIDMRY >Mature_819_residues MQLFKIFIFVVFILFVFNLGYSQENYKDKMIKSIDFNGLKNIKENDLKFILNVYLGQTYSDELFDRLQVDLYALDYFEGL IRPEFRIEDDKLVITFFVKEKSLVKTVTFIDDSGIFWNSELRDKSDVKVKEALNLSRIKKSVVKFEEMYKDAGYLDVTVE FDIKEENSLVDIVFKINAGPKYVVKEVSFEGNLNFKSRILRKYLVSKPSSLFADGKYLKSNVDKDKMRLESYYKNNGYIN AKVVNNTVDIRIPSDSKKMEREVYLKYFISEGNIFKFGKFEITGNLVFKLEELQSLITFREGDIFDDSRFEQDFAKIRDK YYSDGYIFTEIVPSRTIRDEFVDYSINILEKEKAHIESITVSGNKKTASHVILREIPLMEGDVFSLEKLRMGMLNLQRLG YFGNVIPDVVPSSIEGLMKINFVVEERETASLRFGMNFGGVSNSWLPFSVFGQWEQSNFLGEGYALSARLNLAFSEQSFR LMFEDNWFMQTRWTLGGFIDFSHSINTAYQDINGPIFIGKKEVPDPFVSWEAYNNDKNFSDFNIMNYSLAKFSISGFTGY TFSNYLGKQSFVGTVQTALKYVYYDNNVNRPSNYYLRDNYNTIRFENSFGISVAWDTRNSQSLSNNGFLLKQQFDFFGGF LLGQSHFSKSTTTFERYFSLLGYQDVFTPYFDLILTLRSVYSNVLPPLGNGFEIEVQPHHLIVISENFMIARGWGTLSNI YSSFVNTLQISMPLIKNILVWDILFLDMASYSLEGQENSLFVPFSNFIFSWGFGIRSVLPQMPLSFVIAYPFYFSNEGVN RYYNYSGGFKFFLAIDMRY
Specific function: Unknown
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=477, Percent_Identity=24.7379454926625, Blast_Score=122, Evalue=6e-29,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 95233; Mature: 95233
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLFKIFIFVVFILFVFNLGYSQENYKDKMIKSIDFNGLKNIKENDLKFILNVYLGQTYS CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHEEEEHHHCCCCC DELFDRLQVDLYALDYFEGLIRPEFRIEDDKLVITFFVKEKSLVKTVTFIDDSGIFWNSE HHHHHHHHHHHEEEHHHHHHCCCCEEECCCCEEEEEEECCCCEEEEEEEEECCCCEECCC LRDKSDVKVKEALNLSRIKKSVVKFEEMYKDAGYLDVTVEFDIKEENSLVDIVFKINAGP CCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECCCC KYVVKEVSFEGNLNFKSRILRKYLVSKPSSLFADGKYLKSNVDKDKMRLESYYKNNGYIN CEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHCCCCHHHHHHHHHHCCCCEEE AKVVNNTVDIRIPSDSKKMEREVYLKYFISEGNIFKFGKFEITGNLVFKLEELQSLITFR EEEECCEEEEEECCCCHHHHHHEEEEEEECCCCEEEEEEEEEECEEEEEHHHHHHHHHHC EGDIFDDSRFEQDFAKIRDKYYSDGYIFTEIVPSRTIRDEFVDYSINILEKEKAHIESIT CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCEEEEEECCCCEEEEEE VSGNKKTASHVILREIPLMEGDVFSLEKLRMGMLNLQRLGYFGNVIPDVVPSSIEGLMKI ECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHCCHHHHHCCHHHHCEEEE NFVVEERETASLRFGMNFGGVSNSWLPFSVFGQWEQSNFLGEGYALSARLNLAFSEQSFR EEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCEE LMFEDNWFMQTRWTLGGFIDFSHSINTAYQDINGPIFIGKKEVPDPFVSWEAYNNDKNFS EEEECCEEEEEEECCCEEEEECCCCHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCC DFNIMNYSLAKFSISGFTGYTFSNYLGKQSFVGTVQTALKYVYYDNNVNRPSNYYLRDNY CEEEEEEEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHEEEEEECCCCCCCCCEEEECCC NTIRFENSFGISVAWDTRNSQSLSNNGFLLKQQFDFFGGFLLGQSHFSKSTTTFERYFSL CEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEHHHHHHEEECCHHCCCCHHHHHHHHHH LGYQDVFTPYFDLILTLRSVYSNVLPPLGNGFEIEVQPHHLIVISENFMIARGWGTLSNI HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCEEEEECCCHHHHH YSSFVNTLQISMPLIKNILVWDILFLDMASYSLEGQENSLFVPFSNFIFSWGFGIRSVLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHCCCHHHHHH QMPLSFVIAYPFYFSNEGVNRYYNYSGGFKFFLAIDMRY HCCCEEEEEECEEECCCCCCEEEECCCCEEEEEEEEECC >Mature Secondary Structure MQLFKIFIFVVFILFVFNLGYSQENYKDKMIKSIDFNGLKNIKENDLKFILNVYLGQTYS CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHEEEEHHHCCCCC DELFDRLQVDLYALDYFEGLIRPEFRIEDDKLVITFFVKEKSLVKTVTFIDDSGIFWNSE HHHHHHHHHHHEEEHHHHHHCCCCEEECCCCEEEEEEECCCCEEEEEEEEECCCCEECCC LRDKSDVKVKEALNLSRIKKSVVKFEEMYKDAGYLDVTVEFDIKEENSLVDIVFKINAGP CCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECCCC KYVVKEVSFEGNLNFKSRILRKYLVSKPSSLFADGKYLKSNVDKDKMRLESYYKNNGYIN CEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHCCCCHHHHHHHHHHCCCCEEE AKVVNNTVDIRIPSDSKKMEREVYLKYFISEGNIFKFGKFEITGNLVFKLEELQSLITFR EEEECCEEEEEECCCCHHHHHHEEEEEEECCCCEEEEEEEEEECEEEEEHHHHHHHHHHC EGDIFDDSRFEQDFAKIRDKYYSDGYIFTEIVPSRTIRDEFVDYSINILEKEKAHIESIT CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCEEEEEECCCCEEEEEE VSGNKKTASHVILREIPLMEGDVFSLEKLRMGMLNLQRLGYFGNVIPDVVPSSIEGLMKI ECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHCCHHHHHCCHHHHCEEEE NFVVEERETASLRFGMNFGGVSNSWLPFSVFGQWEQSNFLGEGYALSARLNLAFSEQSFR EEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCEE LMFEDNWFMQTRWTLGGFIDFSHSINTAYQDINGPIFIGKKEVPDPFVSWEAYNNDKNFS EEEECCEEEEEEECCCEEEEECCCCHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCC DFNIMNYSLAKFSISGFTGYTFSNYLGKQSFVGTVQTALKYVYYDNNVNRPSNYYLRDNY CEEEEEEEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHEEEEEECCCCCCCCCEEEECCC NTIRFENSFGISVAWDTRNSQSLSNNGFLLKQQFDFFGGFLLGQSHFSKSTTTFERYFSL CEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEHHHHHHEEECCHHCCCCHHHHHHHHHH LGYQDVFTPYFDLILTLRSVYSNVLPPLGNGFEIEVQPHHLIVISENFMIARGWGTLSNI HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCEEEEECCCHHHHH YSSFVNTLQISMPLIKNILVWDILFLDMASYSLEGQENSLFVPFSNFIFSWGFGIRSVLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHCCCHHHHHH QMPLSFVIAYPFYFSNEGVNRYYNYSGGFKFFLAIDMRY HCCCEEEEEECEEECCCCCCEEEECCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]