| Definition | Borrelia hermsii DAH chromosome, complete genome. |
|---|---|
| Accession | NC_010673 |
| Length | 922,307 |
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The map label for this gene is rnfC [H]
Identifier: 187917951
GI number: 187917951
Start: 66876
End: 69194
Strand: Direct
Name: rnfC [H]
Synonym: BH0072
Alternate gene names: 187917951
Gene position: 66876-69194 (Clockwise)
Preceding gene: 187917950
Following gene: 187917952
Centisome position: 7.25
GC content: 25.1
Gene sequence:
>2319_bases TTGATGTCTAACTTAAAAACACTAAAAATAAAAACAAAAAGGCAGTATAAAGTAAATATAAATGAAATCCAAATGCCTGA ATGTGTTTTAATTCCACTAGAAATAGAAAATTCAAAGTCTACAATATATATCATTGAAAATCAAAGAATCTCAGAAGGAC AAATATTGTCAAAAAATAAAAATGCAGAGCTATACACATATGCTCCAATATCTGGGACAATAGAAAAAATATATATCGCT AATTTTCCAAATGAACATCAATTAAAATCAGCATTAATAAGATTTCACGGGAGAATCAAAAATGAACAAGAATGCTCAGT TGAGGAAGAATCAAGAGAAAAAACACTAGAAAAGTTAATTCGACTAGGAATCCCATGGTTTAATGAACATTCATTATTTC AATATGTAAGTAAATGTAAAAAAATAGATAAAATGATTTTATTAATAAATGGAAAAGATCCATTTACAAATATCTCAGAA ATATTAATAAAAGAAAAATTAAATGAAATTATTTACGGCTTTGAAACAATCGACAAAATATTTAAATGCAAAGAAATACT AATAGTACTCAGCAACTATAACCTAAAAAAAGAACTTGAAACCCTAAATATCTTTAAAGACAAAAGATTAAAAATTAAAT TAATTCCCAATATTTCATATCCATATTCAAATCATGAAATGATAATGCACTTCTTATATAATGAAGAGAGCACAAAAAAT AACATAAACCCAAATAAAAATATACTTTTAGCCAATGTTGAAGACCTTTATAACGTGTACAACACTCTCAAAACAAACTC TCCTTATAAAGAAAAGTTTATAACCATAAACGGCAATCAAAAAATACAAAGTAAAATAATCAAAGTCAAAATTGGAACAT CTATTCAACAAATAATAAATGAAGATATTGATACAAAAAAATATGACGTATTTCTAAACAATCCAGCAAATAAGATTAAA ATAAATAATCTCAATACACCTATAACAAGAGATATATACAGCATTACAATATTAAGAAAAAAATCAATATTTAGTAAAAT AAAACTCTTAAAAATACCCAGTTTTTCACCGCTATATATGGAAGAAATTATTTTGTCAAAAATTAAGGATAACAACAATC TTGTCAATAAAAAATTACAATGCCTTCAATACACTGAAACTGAAATAGAAGATGAAATAAACAAAGTAAAAAAAGAAATA AAGGAAAAAATCCTAAATCTGGGCCTCAACAATGAACCAATATACACTGAAAATAATTTAAAAGATATCTATTTAACTAT TATTTTAGCCTTAATGCCCAGTTTAATATTCTCTTTTACAAATAACGTAAAATTTTTAATTGATACATTCATATTGACAA TCACGAGCTTGTGCTTATACATCCCAATAATGTTAAAATCCAAACATAAATATCTCTCTTTCTTCATATATACTGCATTA ATTATCAGTATAATCTTACCTTTAAATTTATCCATCATGTTAAAAATAATGGCACTATTTTTCACATTTTTAATATTCTT TTATTTCTCAAAGCTTTCCAAATTCCTTGTAAACCCCATATTAATTTCATTTATGTTTTTATTAGTCAATTTCCCATCAA GCTTTAAGCAAACATATTCTAAGGAACTCTCAAGACAAGAAGATATAATTCCTACTTGGCATAAAATAATTCATCAAAAT CCAAACATTCAAAATTTAGAAAGCTTAAAAGGATTTAAAAGACATGAAAACAAGCACATTGATATGATTGAAAAATTTAT AAATGACAAGATATTATCTCATCTAAATATAATGATACCAAGATTTCACATTGAAACCCTGTTTGGGCTACAAAACGAAA AATATTTATCCCCCATTCTGATTTATATTGGTTTTTCATTTATTCTTGGAAAATTCATTATAAATAAATTAATACCACTA TCTTTTTATGCAAGTCTGCTACTAATTGCCTATACATCAAAAAACTTTGGTCTCTACAGTTATATAAGTTTTGATATGTT AACTCTAATAATGTCACCAATTCCAATGATTTTAGTATTTGCAATGGGAACAGAACTGCAAATAGCTCCTCCCTTTAAAT TTGAACAAATACTTTATGGACTTACATTATCTCTAGTATATTTTATAACATTAAGCTATATTCCACTTGAAACTTTATCA GCTGTAATATCCATTTTCATACTACAGGTAAGTTCAACATTAATAAAAAGATATAGCTTAACATTTCAGATTAAAAAAAT CTTGCATCATTTAAGCATGAATAAAGCAAAAGTAATAGAACATAAAAACGACAATGGAGAAGAAATTATAAAATTATGA
Upstream 100 bases:
>100_bases TCCCATTTTTCTTATTGCTATTCCTATTTAAAGCAATAAAATTTACAATTCTTTTAAACATGAGTGAAAAAAACTATAAA AAATATATTAGAGGAATCCT
Downstream 100 bases:
>100_bases GAAATAGTTTAATAATGTATTTGTTAATAAATAATCTGTTATTAATACACTTTATTGGAATTGAAGACATAAAGATAAAA GATAATAAGACATTATCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 772; Mature: 772
Protein sequence:
>772_residues MMSNLKTLKIKTKRQYKVNINEIQMPECVLIPLEIENSKSTIYIIENQRISEGQILSKNKNAELYTYAPISGTIEKIYIA NFPNEHQLKSALIRFHGRIKNEQECSVEEESREKTLEKLIRLGIPWFNEHSLFQYVSKCKKIDKMILLINGKDPFTNISE ILIKEKLNEIIYGFETIDKIFKCKEILIVLSNYNLKKELETLNIFKDKRLKIKLIPNISYPYSNHEMIMHFLYNEESTKN NINPNKNILLANVEDLYNVYNTLKTNSPYKEKFITINGNQKIQSKIIKVKIGTSIQQIINEDIDTKKYDVFLNNPANKIK INNLNTPITRDIYSITILRKKSIFSKIKLLKIPSFSPLYMEEIILSKIKDNNNLVNKKLQCLQYTETEIEDEINKVKKEI KEKILNLGLNNEPIYTENNLKDIYLTIILALMPSLIFSFTNNVKFLIDTFILTITSLCLYIPIMLKSKHKYLSFFIYTAL IISIILPLNLSIMLKIMALFFTFLIFFYFSKLSKFLVNPILISFMFLLVNFPSSFKQTYSKELSRQEDIIPTWHKIIHQN PNIQNLESLKGFKRHENKHIDMIEKFINDKILSHLNIMIPRFHIETLFGLQNEKYLSPILIYIGFSFILGKFIINKLIPL SFYASLLLIAYTSKNFGLYSYISFDMLTLIMSPIPMILVFAMGTELQIAPPFKFEQILYGLTLSLVYFITLSYIPLETLS AVISIFILQVSSTLIKRYSLTFQIKKILHHLSMNKAKVIEHKNDNGEEIIKL
Sequences:
>Translated_772_residues MMSNLKTLKIKTKRQYKVNINEIQMPECVLIPLEIENSKSTIYIIENQRISEGQILSKNKNAELYTYAPISGTIEKIYIA NFPNEHQLKSALIRFHGRIKNEQECSVEEESREKTLEKLIRLGIPWFNEHSLFQYVSKCKKIDKMILLINGKDPFTNISE ILIKEKLNEIIYGFETIDKIFKCKEILIVLSNYNLKKELETLNIFKDKRLKIKLIPNISYPYSNHEMIMHFLYNEESTKN NINPNKNILLANVEDLYNVYNTLKTNSPYKEKFITINGNQKIQSKIIKVKIGTSIQQIINEDIDTKKYDVFLNNPANKIK INNLNTPITRDIYSITILRKKSIFSKIKLLKIPSFSPLYMEEIILSKIKDNNNLVNKKLQCLQYTETEIEDEINKVKKEI KEKILNLGLNNEPIYTENNLKDIYLTIILALMPSLIFSFTNNVKFLIDTFILTITSLCLYIPIMLKSKHKYLSFFIYTAL IISIILPLNLSIMLKIMALFFTFLIFFYFSKLSKFLVNPILISFMFLLVNFPSSFKQTYSKELSRQEDIIPTWHKIIHQN PNIQNLESLKGFKRHENKHIDMIEKFINDKILSHLNIMIPRFHIETLFGLQNEKYLSPILIYIGFSFILGKFIINKLIPL SFYASLLLIAYTSKNFGLYSYISFDMLTLIMSPIPMILVFAMGTELQIAPPFKFEQILYGLTLSLVYFITLSYIPLETLS AVISIFILQVSSTLIKRYSLTFQIKKILHHLSMNKAKVIEHKNDNGEEIIKL >Mature_772_residues MMSNLKTLKIKTKRQYKVNINEIQMPECVLIPLEIENSKSTIYIIENQRISEGQILSKNKNAELYTYAPISGTIEKIYIA NFPNEHQLKSALIRFHGRIKNEQECSVEEESREKTLEKLIRLGIPWFNEHSLFQYVSKCKKIDKMILLINGKDPFTNISE ILIKEKLNEIIYGFETIDKIFKCKEILIVLSNYNLKKELETLNIFKDKRLKIKLIPNISYPYSNHEMIMHFLYNEESTKN NINPNKNILLANVEDLYNVYNTLKTNSPYKEKFITINGNQKIQSKIIKVKIGTSIQQIINEDIDTKKYDVFLNNPANKIK INNLNTPITRDIYSITILRKKSIFSKIKLLKIPSFSPLYMEEIILSKIKDNNNLVNKKLQCLQYTETEIEDEINKVKKEI KEKILNLGLNNEPIYTENNLKDIYLTIILALMPSLIFSFTNNVKFLIDTFILTITSLCLYIPIMLKSKHKYLSFFIYTAL IISIILPLNLSIMLKIMALFFTFLIFFYFSKLSKFLVNPILISFMFLLVNFPSSFKQTYSKELSRQEDIIPTWHKIIHQN PNIQNLESLKGFKRHENKHIDMIEKFINDKILSHLNIMIPRFHIETLFGLQNEKYLSPILIYIGFSFILGKFIINKLIPL SFYASLLLIAYTSKNFGLYSYISFDMLTLIMSPIPMILVFAMGTELQIAPPFKFEQILYGLTLSLVYFITLSYIPLETLS AVISIFILQVSSTLIKRYSLTFQIKKILHHLSMNKAKVIEHKNDNGEEIIKL
Specific function: May be part of a membrane complex involved in electron transport [H]
COG id: COG4656
COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR010208 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR011538 - InterPro: IPR019554 [H]
Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 90284; Mature: 90284
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSNLKTLKIKTKRQYKVNINEIQMPECVLIPLEIENSKSTIYIIENQRISEGQILSKNK CCCCCEEEEEEECCEEEEECCEECCCCEEEEEEEEECCCCEEEEEECCCCCCCCEECCCC NAELYTYAPISGTIEKIYIANFPNEHQLKSALIRFHGRIKNEQECSVEEESREKTLEKLI CCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH RLGIPWFNEHSLFQYVSKCKKIDKMILLINGKDPFTNISEILIKEKLNEIIYGFETIDKI HHCCCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH FKCKEILIVLSNYNLKKELETLNIFKDKRLKIKLIPNISYPYSNHEMIMHFLYNEESTKN HHHHHHHHEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC NINPNKNILLANVEDLYNVYNTLKTNSPYKEKFITINGNQKIQSKIIKVKIGTSIQQIIN CCCCCCCEEEECHHHHHHHHHHHCCCCCCHHEEEEECCCHHHHHEEEEEEECCHHHHHHC EDIDTKKYDVFLNNPANKIKINNLNTPITRDIYSITILRKKSIFSKIKLLKIPSFSPLYM CCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHEEEEEHHHHHHHHHHEEECCCCCHHHH EEIILSKIKDNNNLVNKKLQCLQYTETEIEDEINKVKKEIKEKILNLGLNNEPIYTENNL HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCC KDIYLTIILALMPSLIFSFTNNVKFLIDTFILTITSLCLYIPIMLKSKHKYLSFFIYTAL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH IISIILPLNLSIMLKIMALFFTFLIFFYFSKLSKFLVNPILISFMFLLVNFPSSFKQTYS HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH KELSRQEDIIPTWHKIIHQNPNIQNLESLKGFKRHENKHIDMIEKFINDKILSHLNIMIP HHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC RFHIETLFGLQNEKYLSPILIYIGFSFILGKFIINKLIPLSFYASLLLIAYTSKNFGLYS HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHH YISFDMLTLIMSPIPMILVFAMGTELQIAPPFKFEQILYGLTLSLVYFITLSYIPLETLS HHHHHHHHHHHCCHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH AVISIFILQVSSTLIKRYSLTFQIKKILHHLSMNKAKVIEHKNDNGEEIIKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHCC >Mature Secondary Structure MMSNLKTLKIKTKRQYKVNINEIQMPECVLIPLEIENSKSTIYIIENQRISEGQILSKNK CCCCCEEEEEEECCEEEEECCEECCCCEEEEEEEEECCCCEEEEEECCCCCCCCEECCCC NAELYTYAPISGTIEKIYIANFPNEHQLKSALIRFHGRIKNEQECSVEEESREKTLEKLI CCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH RLGIPWFNEHSLFQYVSKCKKIDKMILLINGKDPFTNISEILIKEKLNEIIYGFETIDKI HHCCCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH FKCKEILIVLSNYNLKKELETLNIFKDKRLKIKLIPNISYPYSNHEMIMHFLYNEESTKN HHHHHHHHEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC NINPNKNILLANVEDLYNVYNTLKTNSPYKEKFITINGNQKIQSKIIKVKIGTSIQQIIN CCCCCCCEEEECHHHHHHHHHHHCCCCCCHHEEEEECCCHHHHHEEEEEEECCHHHHHHC EDIDTKKYDVFLNNPANKIKINNLNTPITRDIYSITILRKKSIFSKIKLLKIPSFSPLYM CCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHEEEEEHHHHHHHHHHEEECCCCCHHHH EEIILSKIKDNNNLVNKKLQCLQYTETEIEDEINKVKKEIKEKILNLGLNNEPIYTENNL HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCC KDIYLTIILALMPSLIFSFTNNVKFLIDTFILTITSLCLYIPIMLKSKHKYLSFFIYTAL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH IISIILPLNLSIMLKIMALFFTFLIFFYFSKLSKFLVNPILISFMFLLVNFPSSFKQTYS HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH KELSRQEDIIPTWHKIIHQNPNIQNLESLKGFKRHENKHIDMIEKFINDKILSHLNIMIP HHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC RFHIETLFGLQNEKYLSPILIYIGFSFILGKFIINKLIPLSFYASLLLIAYTSKNFGLYS HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHH YISFDMLTLIMSPIPMILVFAMGTELQIAPPFKFEQILYGLTLSLVYFITLSYIPLETLS HHHHHHHHHHHCCHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH AVISIFILQVSSTLIKRYSLTFQIKKILHHLSMNKAKVIEHKNDNGEEIIKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 4Fe-4S clusters [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]