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The map label for this gene is dsdA

Identifier: 187734042

GI number: 187734042

Start: 2533959

End: 2535227

Strand: Direct

Name: dsdA

Synonym: SbBS512_E2735

Alternate gene names: 187734042

Gene position: 2533959-2535227 (Clockwise)

Preceding gene: 187730549

Following gene: 187733890

Centisome position: 54.9

GC content: 51.14

Gene sequence:

>1269_bases
GTGGCCAAATTCAGTGTGCCACTTCATCCTGGCACGACCTCATTGGCTGAAGGTTTACCTTATGTTGGCCTGAACGAACA
GGATGTTCAGGACGCCCATGCGCGCTTATCCCGTTTTGCACCCTATCTGGCAAAAGCATTTGCTGAAACTGCTGCCACTG
GGGGGATTATTGAATCAGAACTGGTTGCCATTCCAGCTATGCAAAAACGGCTGGAAAAAGAATATCAGCAACCGATCAGC
GGGCAACTGTTACTGAAAAAAGATAGCCATTTGCCCATTTCCAGCTCCATAAAAGCACGCGGCGGGATTTATGAAGTCCT
GGCACACGCAGAAAAACTGGCTCTGGAAGCGGGGTTGCTGACGCTTGATGATGACTACAGCAAACTGCTTTCTCCGGAGT
TTAAACAGTTCTTTAGCCAATACAGCATTGCTGTGGGCTCAACCGGAAATCTGGGGTTATCAATCGGCATTATGAGCGCC
CGCATTGGCTTTAAGGTGACAGTTCATATGTCTGCTGATGCCTGGGCATGGAAAAAAGCGAAACTGCGCAGCCATGGCGT
TACGGTCGTGGAATATGAGCAAGATTATGGTGTTGCCGTCGAGGAAGGACGTAAAGCAGCGCAGTCTGACCCGAACTGTT
TCTTTATTGATGACGAAAATTCCCGCACGTTGTTCCTTGGGTATTCCGTCGCTGGCCAGCGTCTTAAAGCGCAATTTGCC
CAGCAAGGCCGTATCGTCGATGCTGATAACCCTCTGTTTGTCTATCTGCCGTGTGGTGTTGGCGGTGGTCCTGGTGGCGT
CGCATTCGGGCTTAAACTGGCGTTTGGCGATCATGTTCACTGCTTTTTTGCCGAACCAACGCACTCCCCTTGTATGTTGT
TAGGCGTCCATACAGGATTACACGATCAGATTTCTGTTCAGGATATTGGTATCGACAACCTTACCGCAGCGGATGGCCTT
GCAGTTGGTCGCGCATCAGGCTTTGTCGGGCGGGCAATGGTGCGTCTGCTGGATGGCTTCTATACCCTTAGCGATCAAAC
CATGTATGACATGCTTGGCTGGCTGGCGCAGGAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGAC
CTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTG
GTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAA

Upstream 100 bases:

>100_bases
AACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCTGAGGTG
AGCATATCACCTCTGTTCAG

Downstream 100 bases:

>100_bases
TAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGATCCCCGGTCTT
ACCCGCTATAACCCCCTCCT

Product: D-serine dehydratase

Products: NA

Alternate protein names: D-serine deaminase; DSD [H]

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MAKFSVPLHPGTTSLAEGLPYVGLNEQDVQDAHARLSRFAPYLAKAFAETAATGGIIESELVAIPAMQKRLEKEYQQPIS
GQLLLKKDSHLPISSSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSA
RIGFKVTVHMSADAWAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFA
QQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGL
AVGRASGFVGRAMVRLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHL
VWATGGGMVPEEEMNQYLAKGR

Sequences:

>Translated_422_residues
MAKFSVPLHPGTTSLAEGLPYVGLNEQDVQDAHARLSRFAPYLAKAFAETAATGGIIESELVAIPAMQKRLEKEYQQPIS
GQLLLKKDSHLPISSSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSA
RIGFKVTVHMSADAWAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFA
QQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGL
AVGRASGFVGRAMVRLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHL
VWATGGGMVPEEEMNQYLAKGR
>Mature_421_residues
AKFSVPLHPGTTSLAEGLPYVGLNEQDVQDAHARLSRFAPYLAKAFAETAATGGIIESELVAIPAMQKRLEKEYQQPISG
QLLLKKDSHLPISSSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSAR
IGFKVTVHMSADAWAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQ
QGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLA
VGRASGFVGRAMVRLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLV
WATGGGMVPEEEMNQYLAKGR

Specific function: Unknown

COG id: COG3048

COG function: function code E; D-serine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the serine/threonine dehydratase family. DsdA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788708, Length=415, Percent_Identity=98.3132530120482, Blast_Score=838, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011780
- InterPro:   IPR001926
- InterPro:   IPR000634 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.3.1.18 [H]

Molecular weight: Translated: 45578; Mature: 45447

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS00165 DEHYDRATASE_SER_THR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKFSVPLHPGTTSLAEGLPYVGLNEQDVQDAHARLSRFAPYLAKAFAETAATGGIIESE
CCCEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISSSIKARGGIYEVLAHAEKLALEAGLL
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEE
TLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADAWAWKKA
EECCCHHHHCCHHHHHHHHHHEEEECCCCCCEEEEEEEEEECCEEEEEEECCCCCHHHHH
KLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFA
HHHHCCEEEEEECCCCCCCHHHCCHHHCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHH
QQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGL
HCCCEEECCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCEEEEEECCCC
HDQISVQDIGIDNLTAADGLAVGRASGFVGRAMVRLLDGFYTLSDQTMYDMLGWLAQEEG
CCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
IRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEEMNQYLAK
CEECHHHHHCCCCHHHHHHHCCHHHHCCCCHHHHCCCEEEEEECCCCCCCHHHHHHHHHC
GR
CC
>Mature Secondary Structure 
AKFSVPLHPGTTSLAEGLPYVGLNEQDVQDAHARLSRFAPYLAKAFAETAATGGIIESE
CCEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISSSIKARGGIYEVLAHAEKLALEAGLL
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEE
TLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADAWAWKKA
EECCCHHHHCCHHHHHHHHHHEEEECCCCCCEEEEEEEEEECCEEEEEEECCCCCHHHHH
KLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFA
HHHHCCEEEEEECCCCCCCHHHCCHHHCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHH
QQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGL
HCCCEEECCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCEEEEEECCCC
HDQISVQDIGIDNLTAADGLAVGRASGFVGRAMVRLLDGFYTLSDQTMYDMLGWLAQEEG
CCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
IRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEEMNQYLAK
CEECHHHHHCCCCHHHHHHHCCHHHHCCCCHHHHCCCEEEEEECCCCCCCHHHHHHHHHC
GR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA