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The map label for this gene is dmsB_1

Identifier: 187733724

GI number: 187733724

Start: 1619270

End: 1619716

Strand: Direct

Name: dmsB_1

Synonym: SbBS512_E1775

Alternate gene names: 187733724

Gene position: 1619270-1619716 (Clockwise)

Preceding gene: 187734181

Following gene: 187730553

Centisome position: 35.08

GC content: 54.36

Gene sequence:

>447_bases
GTGTTCGCTTATTATCTCTCCATCTCCTGTAACCATTGCGATGACCCCGCATGTACAAAAGTCTGCCCCAGCGGCGCAAT
GCATAAGCGTGAAGATGGCTTTGTGGTGGTTGATGAAGATGTTTGTATCGGCTGCCGCTACTGCCACATGGCTTGTCCGT
ACGGCGCACCACAGTACAATGCTGAAAAAGGGCACATGACGAATTGCGATGGTTGTTATTCGCGCGTCGCCGAGGGGAAA
CAACCCATATGCATCGAATCCTGCCCGCTGCGTGCACTTGAGTTCGGTCCAATTGAAGAGCTGCGCCAGAAGCACGGCAC
TCTGGCTGCCGTCGCGCCACTGCCGCGCGCGCATTTCACAAAACCCAATATCGTTATCAAACCTAACGCCAACAGCCGCC
CGACCGGCGATACCACTGGTTATCTGGCTAATCCGGAGGAAGTGTAA

Upstream 100 bases:

>100_bases
CCAAGATTTTAAAGATCTTGGCCCGGAAGTCAGTTTCCGCCGTATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATA
ATGGCATCTGGCACCAGAAC

Downstream 100 bases:

>100_bases
AATGGGAAATGGATGGCATGAATGGCCACTGGTTATCTTTACCGTATTGGGTCAATGCGTAGTAGGCGCGCTGATTGTTA
GCGGAATTGGCTGGTTCGCC

Product: anaerobic dimethyl sulfoxide reductase, B subunit

Products: NA

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHMTNCDGCYSRVAEGK
QPICIESCPLRALEFGPIEELRQKHGTLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPEEV

Sequences:

>Translated_148_residues
MFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHMTNCDGCYSRVAEGK
QPICIESCPLRALEFGPIEELRQKHGTLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPEEV
>Mature_148_residues
MFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHMTNCDGCYSRVAEGK
QPICIESCPLRALEFGPIEELRQKHGTLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPEEV

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787872, Length=148, Percent_Identity=97.972972972973, Blast_Score=305, Evalue=7e-85,
Organism=Escherichia coli, GI1787122, Length=148, Percent_Identity=91.2162162162162, Blast_Score=289, Evalue=6e-80,
Organism=Escherichia coli, GI1789370, Length=127, Percent_Identity=38.5826771653543, Blast_Score=86, Evalue=8e-19,
Organism=Escherichia coli, GI1787478, Length=96, Percent_Identity=42.7083333333333, Blast_Score=85, Evalue=2e-18,
Organism=Escherichia coli, GI1787740, Length=98, Percent_Identity=40.8163265306122, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1787749, Length=95, Percent_Identity=40, Blast_Score=83, Evalue=6e-18,
Organism=Escherichia coli, GI226510944, Length=94, Percent_Identity=44.6808510638298, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1790326, Length=94, Percent_Identity=39.3617021276596, Blast_Score=81, Evalue=3e-17,
Organism=Escherichia coli, GI2367345, Length=129, Percent_Identity=34.8837209302326, Blast_Score=77, Evalue=4e-16,
Organism=Escherichia coli, GI2367245, Length=104, Percent_Identity=35.5769230769231, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788811, Length=96, Percent_Identity=34.375, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1789067, Length=99, Percent_Identity=37.3737373737374, Blast_Score=60, Evalue=5e-11,
Organism=Escherichia coli, GI87082180, Length=96, Percent_Identity=36.4583333333333, Blast_Score=59, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 16197; Mature: 16197

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
10.8 %Cys+Met (Translated Protein)
8.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
10.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYN
CEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCEEEECCCEEECEEEEEEECCCCCCCCC
AEKGHMTNCDGCYSRVAEGKQPICIESCPLRALEFGPIEELRQKHGTLAAVAPLPRAHFT
CCCCCCCCCHHHHHHHHCCCCCEEECCCCCCEECCCCHHHHHHHCCCEEEECCCCCCCCC
KPNIVIKPNANSRPTGDTTGYLANPEEV
CCCEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYN
CEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCEEEECCCEEECEEEEEEECCCCCCCCC
AEKGHMTNCDGCYSRVAEGKQPICIESCPLRALEFGPIEELRQKHGTLAAVAPLPRAHFT
CCCCCCCCCHHHHHHHHCCCCCEEECCCCCCEECCCCHHHHHHHCCCEEEECCCCCCCCC
KPNIVIKPNANSRPTGDTTGYLANPEEV
CCCEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 2174699; 1653010 [H]