| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is 187733297
Identifier: 187733297
GI number: 187733297
Start: 4424067
End: 4426142
Strand: Reverse
Name: 187733297
Synonym: SbBS512_E4741
Alternate gene names: NA
Gene position: 4426142-4424067 (Counterclockwise)
Preceding gene: 187733783
Following gene: 187730433
Centisome position: 95.89
GC content: 52.17
Gene sequence:
>2076_bases ATGAGTCAGCTTGATGACACCATCCTTGATGCGCTGACGCACGTTACTTTCCCAAAGGGTTTTGCACAGGCAGAGCCCGC ATGGGTTGTCACGGTAGACGGTGTTAATTACCCACTCTGGCAAACAGATGCCCTGGTAGTCGGCAGTGGTGCAGCAAGAT TACGTGCGGCAGTTGAACTTAAACGCCGCCAGCAAAATGTGCTGATCGCTACCGCCGGGTTATATATGGGGACGTCGGCA TGTTCTGGTTCCGATAAACAGACACTATTTACCGCCGCTACCGCGGGCAACGGCGACAACTTCACCAAACTGGCAGAGGC ACTGGCGAGCGGTGGGGCGATGGATCACGACACCGCTTATGTCGAAGCGGTAGGTTCTCTGCACACTCTAGGCGGGTTGC AATATCTTGGTCTGGAATTACCGGAAGATCGCTATGGCGCGATTCTTCGTTATCAAACCGACCATGACGAAGCCGGGCGT GCAACCTCGTGTGGGCCGCGTACCTCAAGGTTAATGGTGAAAGTGCTGTTGGAAGAAGTACAGCGCCTCGCCATTCCAGT GTTGACCAGTGCAACAGTGATTAAACTGCTGCATCAGCGTGACGAAAACGGCGAAGACCGCGTGGCAGGGGCAATCCTCG CGACCGGTCATCGCGCCCATAACCCATGGGGGCTGGCAATTGTGACTGCGCCCAATGTGGTACTGGCAACGGGCGGACCG GGCGAGCTTTATCGCGACAGTGTTTATCCACATAAATGCTTCGGCTCGCTGGGGCTGGCGCTGGAGGAAGGTCTGACGCT AACCAATCTGACCGAAAGCCAGTTTGGTATAGGCACGCCGCGTAGCACGTTTCCGTGGAATTTATCCGGCACCTATGTAC AGGTGATCCCGTATATCTATTCCGTGGATGCTGAGGGTAACGAGTATAACTTCCTCGCGGATTACTATCGCACCACCCAG GAGCTGGCTTCAAACATTTTCCGTAAAGGCTATCAGTGGCCGTTCCACGCCACTCGGGTGATGGATTTTGGCTCCAGCTT GTTAGATATGGCAGTAGCGCAAGAGCAGCAATCAGGGCGTCAGGTATTTATGGATTTCAATCGCAATCCTGAAGCGGTGC CGGGTGACCTGCCGTTCTCATTAGATCGACTGGACGACGACGTTCGCGCGTATCTGGAAAATAACGACGCTCTGGCACCA TCGCCCATCGAACGGCTGCAACGAATGAATCCGCTGTCTATCTCGCTGTATAAGATGCACGGTTACGATCTCACCACACA GCCTTTGCAGTTTGCCATGAATAATCAGCATATGAATGGCTGCATTGAAGTGGATATCTGGGGACAAACCTCCCTGCCCG GCTGTTTCGCCGTGGGGGAAGTTGCTGGCACACACGGCGTCACTCGCCCAGGTGGTGCAGCATTGAATGCCGGGCAGGTT TTTGCTGTTCGTCTGGCACGTTTTATTGGTTGCACGCAAAAGCGGTCTGTTGAGGGTGATGTCGCGCAGCTGGTAGCCTC ATCTCTGAATATAGTCAGAGAAGTTATCGCTCAGGCACTGGCAAACGAGAACGGAATGGCGCTGGTAACGGTGAAAGACA AAATCCAGGCGCGAATGTCTGATTACGCCGGATTTATTTGTCATGCCGATAAAGTTCGTCATGCCACCCGTGACGCCCTG CTGCTAAGTGAGTTTGTACAACAACACGGTTTAACCATCAATCACGCAGGCGAAATTGCCGAACTGTTTATGTGGCGGCA TATGACGCTGACTTCTGCCGCCGTATTAACGCAATTGACGCATTATATTGACGCAGGTGGAGGCAGTCGTGGAGCACGGA TGGTTATTGATCCACAAGGCAAATGCCTCCCACAAACTCGTCGCGGCGCAAAAGAAGAATGGCGTTTTCGCTCTGAACGT GCTGAAGACAAAAATCACAGATTAACGATTCAATATTCGCAAGGTTCTTTTATTACCGAAGTGAAGTCTTTACGTATGCA ACCGTGTATTAACGGTATTTACTTTGAAAAAAACTGGCCAGACTTTTTAGGTAATGCTGCCAACTTACTGATTTAG
Upstream 100 bases:
>100_bases TGGAGATTGAGCGCGACATTCTGCCGTATATGGCTTTCCGTCCAATTATCAAGCACCCACGCCTGATGGAAAGTAGCCTG TTTACGCCGATGGAGGATGC
Downstream 100 bases:
>100_bases TGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGG TGCGTAACGGCAAAAGCACT
Product: pyridine nucleotide-disulphide oxidoreductase
Products: NA
Alternate protein names: Succinate Dehydrogenase; Oxidoreductase Protein; Pyridine Nucleotide-Disulphide Oxidoreductase
Number of amino acids: Translated: 691; Mature: 690
Protein sequence:
>691_residues MSQLDDTILDALTHVTFPKGFAQAEPAWVVTVDGVNYPLWQTDALVVGSGAARLRAAVELKRRQQNVLIATAGLYMGTSA CSGSDKQTLFTAATAGNGDNFTKLAEALASGGAMDHDTAYVEAVGSLHTLGGLQYLGLELPEDRYGAILRYQTDHDEAGR ATSCGPRTSRLMVKVLLEEVQRLAIPVLTSATVIKLLHQRDENGEDRVAGAILATGHRAHNPWGLAIVTAPNVVLATGGP GELYRDSVYPHKCFGSLGLALEEGLTLTNLTESQFGIGTPRSTFPWNLSGTYVQVIPYIYSVDAEGNEYNFLADYYRTTQ ELASNIFRKGYQWPFHATRVMDFGSSLLDMAVAQEQQSGRQVFMDFNRNPEAVPGDLPFSLDRLDDDVRAYLENNDALAP SPIERLQRMNPLSISLYKMHGYDLTTQPLQFAMNNQHMNGCIEVDIWGQTSLPGCFAVGEVAGTHGVTRPGGAALNAGQV FAVRLARFIGCTQKRSVEGDVAQLVASSLNIVREVIAQALANENGMALVTVKDKIQARMSDYAGFICHADKVRHATRDAL LLSEFVQQHGLTINHAGEIAELFMWRHMTLTSAAVLTQLTHYIDAGGGSRGARMVIDPQGKCLPQTRRGAKEEWRFRSER AEDKNHRLTIQYSQGSFITEVKSLRMQPCINGIYFEKNWPDFLGNAANLLI
Sequences:
>Translated_691_residues MSQLDDTILDALTHVTFPKGFAQAEPAWVVTVDGVNYPLWQTDALVVGSGAARLRAAVELKRRQQNVLIATAGLYMGTSA CSGSDKQTLFTAATAGNGDNFTKLAEALASGGAMDHDTAYVEAVGSLHTLGGLQYLGLELPEDRYGAILRYQTDHDEAGR ATSCGPRTSRLMVKVLLEEVQRLAIPVLTSATVIKLLHQRDENGEDRVAGAILATGHRAHNPWGLAIVTAPNVVLATGGP GELYRDSVYPHKCFGSLGLALEEGLTLTNLTESQFGIGTPRSTFPWNLSGTYVQVIPYIYSVDAEGNEYNFLADYYRTTQ ELASNIFRKGYQWPFHATRVMDFGSSLLDMAVAQEQQSGRQVFMDFNRNPEAVPGDLPFSLDRLDDDVRAYLENNDALAP SPIERLQRMNPLSISLYKMHGYDLTTQPLQFAMNNQHMNGCIEVDIWGQTSLPGCFAVGEVAGTHGVTRPGGAALNAGQV FAVRLARFIGCTQKRSVEGDVAQLVASSLNIVREVIAQALANENGMALVTVKDKIQARMSDYAGFICHADKVRHATRDAL LLSEFVQQHGLTINHAGEIAELFMWRHMTLTSAAVLTQLTHYIDAGGGSRGARMVIDPQGKCLPQTRRGAKEEWRFRSER AEDKNHRLTIQYSQGSFITEVKSLRMQPCINGIYFEKNWPDFLGNAANLLI >Mature_690_residues SQLDDTILDALTHVTFPKGFAQAEPAWVVTVDGVNYPLWQTDALVVGSGAARLRAAVELKRRQQNVLIATAGLYMGTSAC SGSDKQTLFTAATAGNGDNFTKLAEALASGGAMDHDTAYVEAVGSLHTLGGLQYLGLELPEDRYGAILRYQTDHDEAGRA TSCGPRTSRLMVKVLLEEVQRLAIPVLTSATVIKLLHQRDENGEDRVAGAILATGHRAHNPWGLAIVTAPNVVLATGGPG ELYRDSVYPHKCFGSLGLALEEGLTLTNLTESQFGIGTPRSTFPWNLSGTYVQVIPYIYSVDAEGNEYNFLADYYRTTQE LASNIFRKGYQWPFHATRVMDFGSSLLDMAVAQEQQSGRQVFMDFNRNPEAVPGDLPFSLDRLDDDVRAYLENNDALAPS PIERLQRMNPLSISLYKMHGYDLTTQPLQFAMNNQHMNGCIEVDIWGQTSLPGCFAVGEVAGTHGVTRPGGAALNAGQVF AVRLARFIGCTQKRSVEGDVAQLVASSLNIVREVIAQALANENGMALVTVKDKIQARMSDYAGFICHADKVRHATRDALL LSEFVQQHGLTINHAGEIAELFMWRHMTLTSAAVLTQLTHYIDAGGGSRGARMVIDPQGKCLPQTRRGAKEEWRFRSERA EDKNHRLTIQYSQGSFITEVKSLRMQPCINGIYFEKNWPDFLGNAANLLI
Specific function: Unknown
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75703; Mature: 75571
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQLDDTILDALTHVTFPKGFAQAEPAWVVTVDGVNYPLWQTDALVVGSGAARLRAAVEL CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHH KRRQQNVLIATAGLYMGTSACSGSDKQTLFTAATAGNGDNFTKLAEALASGGAMDHDTAY HHCCCCEEEEECCHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCHHH VEAVGSLHTLGGLQYLGLELPEDRYGAILRYQTDHDEAGRATSCGPRTSRLMVKVLLEEV HHHHHHHHHHCCCCEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH QRLAIPVLTSATVIKLLHQRDENGEDRVAGAILATGHRAHNPWGLAIVTAPNVVLATGGP HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEECCCCCCCCCEEEEEECCCEEEEECCC GELYRDSVYPHKCFGSLGLALEEGLTLTNLTESQFGIGTPRSTFPWNLSGTYVQVIPYIY CHHHHCCCCCHHHHHHHCHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE SVDAEGNEYNFLADYYRTTQELASNIFRKGYQWPFHATRVMDFGSSLLDMAVAQEQQSGR EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCC QVFMDFNRNPEAVPGDLPFSLDRLDDDVRAYLENNDALAPSPIERLQRMNPLSISLYKMH EEEEECCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEEE GYDLTTQPLQFAMNNQHMNGCIEVDIWGQTSLPGCFAVGEVAGTHGVTRPGGAALNAGQV CCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHH FAVRLARFIGCTQKRSVEGDVAQLVASSLNIVREVIAQALANENGMALVTVKDKIQARMS HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH DYAGFICHADKVRHATRDALLLSEFVQQHGLTINHAGEIAELFMWRHMTLTSAAVLTQLT HHCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH HYIDAGGGSRGARMVIDPQGKCLPQTRRGAKEEWRFRSERAEDKNHRLTIQYSQGSFITE HHHHCCCCCCCCEEEECCCCCCCCHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHH VKSLRMQPCINGIYFEKNWPDFLGNAANLLI HHHHHHHHCCCCEEECCCCHHHHCCHHHHCC >Mature Secondary Structure SQLDDTILDALTHVTFPKGFAQAEPAWVVTVDGVNYPLWQTDALVVGSGAARLRAAVEL CCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHH KRRQQNVLIATAGLYMGTSACSGSDKQTLFTAATAGNGDNFTKLAEALASGGAMDHDTAY HHCCCCEEEEECCHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCHHH VEAVGSLHTLGGLQYLGLELPEDRYGAILRYQTDHDEAGRATSCGPRTSRLMVKVLLEEV HHHHHHHHHHCCCCEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH QRLAIPVLTSATVIKLLHQRDENGEDRVAGAILATGHRAHNPWGLAIVTAPNVVLATGGP HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEECCCCCCCCCEEEEEECCCEEEEECCC GELYRDSVYPHKCFGSLGLALEEGLTLTNLTESQFGIGTPRSTFPWNLSGTYVQVIPYIY CHHHHCCCCCHHHHHHHCHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE SVDAEGNEYNFLADYYRTTQELASNIFRKGYQWPFHATRVMDFGSSLLDMAVAQEQQSGR EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCC QVFMDFNRNPEAVPGDLPFSLDRLDDDVRAYLENNDALAPSPIERLQRMNPLSISLYKMH EEEEECCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEEE GYDLTTQPLQFAMNNQHMNGCIEVDIWGQTSLPGCFAVGEVAGTHGVTRPGGAALNAGQV CCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHH FAVRLARFIGCTQKRSVEGDVAQLVASSLNIVREVIAQALANENGMALVTVKDKIQARMS HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH DYAGFICHADKVRHATRDALLLSEFVQQHGLTINHAGEIAELFMWRHMTLTSAAVLTQLT HHCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH HYIDAGGGSRGARMVIDPQGKCLPQTRRGAKEEWRFRSERAEDKNHRLTIQYSQGSFITE HHHHCCCCCCCCEEEECCCCCCCCHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHH VKSLRMQPCINGIYFEKNWPDFLGNAANLLI HHHHHHHHCCCCEEECCCCHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA