| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is yebE [H]
Identifier: 187732999
GI number: 187732999
Start: 1929947
End: 1930606
Strand: Reverse
Name: yebE [H]
Synonym: SbBS512_E2121
Alternate gene names: 187732999
Gene position: 1930606-1929947 (Counterclockwise)
Preceding gene: 187730388
Following gene: 187733802
Centisome position: 41.82
GC content: 52.27
Gene sequence:
>660_bases TTGAGTAACTGGTTAAATCAACTGCAATCCCTGCTTGGGCAAAGCAGTTCTTCTATCTCCTCGTCTGCGGATCAGGGATT GGGCAAACTGTTAGTGCCAGGCGCATTAGGCGGACTGGCTGGGCTGCTGGTCGCAAATAAATCAGCACGTAAACTTCTTA CGAAATATGGCACCAACGCGTTACTGGTTGGCGGCGGAGCGGTAGCGGGTACGGTGCTGTGGAATAAATACAAAGATAAA ATTCGCGCGGCGCATCAGGACGAACCGCAGTTTGGCGCGCAAAGTACGCCGCTGGATGAGCGTACAGAACGTTTGATCCT TGCGCTGGTCTTTGCCGCTAAAAGTGATGGTCATATTGATGCCAAAGAACGTGCGGCAATCGACCAGCAATTGCGTGAAG CCGGCGTGGAAGAGCAGGGGCGTGTACTCATTGAGCAGGCAATCGAACAACCGCTGGATCCACAACGCCTGGCTACCGGG GTCCGCAATGAAGAAGAGGCGCTGGAAATCTATTTCCTGAGTTGCGCGGCTATTGATATTGACCATTTTATGGAACGCAG TTACCTGAATGCACTGGGTGACGCGCTGAAAATCCCCCAGGATGTTCGTGACGGCATTGAACGCGATCTCGAACAGCAAA AACGCACTTTGGCGGAATAA
Upstream 100 bases:
>100_bases TGAATAACGGCCTACCGCCCCGCTTATTTGCGCATCTTTTGTCTCGATATACATTTTCTGACATCCTCATCCGCTATGCT ACAGGCACTAAAAATGGTTA
Downstream 100 bases:
>100_bases TTCCGCTCTCTGGATAGCCTGAAGTTGACTATTTCGGGCTATCCAGAATCGCACAGCCATTTGAACAGGCTGATTTTCTC TGTCTGCATAACATTCGATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MSNWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLVANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDK IRAAHQDEPQFGAQSTPLDERTERLILALVFAAKSDGHIDAKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATG VRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLAE
Sequences:
>Translated_219_residues MSNWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLVANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDK IRAAHQDEPQFGAQSTPLDERTERLILALVFAAKSDGHIDAKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATG VRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLAE >Mature_218_residues SNWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLVANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKI RAAHQDEPQFGAQSTPLDERTERLILALVFAAKSDGHIDAKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATGV RNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLAE
Specific function: Unknown
COG id: COG2979
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788151, Length=219, Percent_Identity=97.7168949771689, Blast_Score=375, Evalue=1e-105,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007486 [H]
Pfam domain/function: PF04391 DUF533 [H]
EC number: NA
Molecular weight: Translated: 23803; Mature: 23672
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLVANKSARKLLTKYGTNA CCHHHHHHHHHHCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCCCE LLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERTERLILALVFAAKSDGHID EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC AKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATGVRNEEEALEIYFLSCAAIDI HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH DHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLAE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SNWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLVANKSARKLLTKYGTNA CHHHHHHHHHHCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCCCE LLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERTERLILALVFAAKSDGHID EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC AKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATGVRNEEEALEIYFLSCAAIDI HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH DHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLAE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]