| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is yfbT
Identifier: 187732875
GI number: 187732875
Start: 2471991
End: 2472641
Strand: Reverse
Name: yfbT
Synonym: SbBS512_E2669
Alternate gene names: 187732875
Gene position: 2472641-2471991 (Counterclockwise)
Preceding gene: 187732289
Following gene: 187731815
Centisome position: 53.57
GC content: 56.07
Gene sequence:
>651_bases GTGCGGTGCAAAGGTTTTCTGTTTGATCTTGATGGAACGCTGGTGGATTCCCTGCCTGCGGTAGAACGGGCGTGGAGCAA CTGGGCCAGACGTCATGGGTTAGCGCCGGAAGAGGTGCTGGCTTTCATTCACGGTAAACAGGCGATCACCTCTTTGCGCC ATTTTATGGCGGGCAAATCCGAGGCTGATATTGCCGCCGAGTTTACGCGTCTGGAGCACATCGAGGCCACGGAAAACGAA GGTATTACCGCGCTTCCGGGGGCAATCGCCTTACTCAATCATTTGAATAAAGCAGGTATTCCGTGGGCCATTGTGACTTC TGGCTCCATGCCGGTAGCGCGAGCGCGCCATAAAATAGCTGGGCTTCCCGCACCAGAGGTGTTTGTAACCGCTGAGCGAG TGAAGCGCGGAAAACCAGAACCTGATGCGTATCTGTTAGGTGCGCAGCTGCTGGGGCTTGCGCCGCAGGAGTGTGTGGTG GCGGAAGATGCTCCCGCTGGCGTGCTTTCTGGCCTGGCGGCGGGTTGCCATGTCATTGCGGTTAACGCTCCGGCAGATAC CCCGCGCCTGAATGAGGTCGATTTGGTCCTCCACAGTCTGGAGCAAATTACTGTGACCAAACAGCTAAATGGCGATGTTA TTATTCAGTGA
Upstream 100 bases:
>100_bases AAATATCAGCGCATGCTTAATGTGTGGCATGCCTGCCCGCGTCAGTACCATTTGAGCGCCAACGAAATTAATCAAATTAT CAACGCCTGAGGAGGCCCGC
Downstream 100 bases:
>100_bases AACACCTGATCATGATTTAGCCCCGTCTCGTCGGGGCTTTTTTATGGCAGAATCAAGTCATCCCCCTCAATTAACAAGGA TAAGTTGTGAACGGTGAATT
Product: putative phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 216; Mature: 216
Protein sequence:
>216_residues MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIHGKQAITSLRHFMAGKSEADIAAEFTRLEHIEATENE GITALPGAIALLNHLNKAGIPWAIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV AEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ
Sequences:
>Translated_216_residues MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIHGKQAITSLRHFMAGKSEADIAAEFTRLEHIEATENE GITALPGAIALLNHLNKAGIPWAIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV AEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ >Mature_216_residues MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIHGKQAITSLRHFMAGKSEADIAAEFTRLEHIEATENE GITALPGAIALLNHLNKAGIPWAIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV AEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ
Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrate glucose 6-phosphate [H]
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Homo sapiens, GI197382691, Length=213, Percent_Identity=30.9859154929577, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI207113149, Length=233, Percent_Identity=27.4678111587983, Blast_Score=68, Evalue=6e-12, Organism=Escherichia coli, GI87082080, Length=216, Percent_Identity=98.1481481481482, Blast_Score=428, Evalue=1e-121, Organism=Escherichia coli, GI1789046, Length=192, Percent_Identity=29.6875, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1790151, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6321834, Length=229, Percent_Identity=32.3144104803493, Blast_Score=105, Evalue=7e-24, Organism=Saccharomyces cerevisiae, GI6321833, Length=229, Percent_Identity=31.8777292576419, Blast_Score=104, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6322136, Length=225, Percent_Identity=31.5555555555556, Blast_Score=86, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6320905, Length=225, Percent_Identity=31.5555555555556, Blast_Score=85, Evalue=7e-18, Organism=Drosophila melanogaster, GI20129151, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006439 - InterPro: IPR006402 - InterPro: IPR005833 - InterPro: IPR023198 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 23036; Mature: 23036
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIHGKQAITSLRHFMAGKS CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC EADIAAEFTRLEHIEATENEGITALPGAIALLNHLNKAGIPWAIVTSGSMPVARARHKIA CHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHC GLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVAEDAPAGVLSGLAAGCHVIA CCCCCHHEEEHHHHHCCCCCCCCEEHHHHHHCCCCCHHEEECCCCHHHHHHHHCCCEEEE VNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ EECCCCCCCCCHHHHHHHHHHHHEEEEECCCCEEEC >Mature Secondary Structure MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIHGKQAITSLRHFMAGKS CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC EADIAAEFTRLEHIEATENEGITALPGAIALLNHLNKAGIPWAIVTSGSMPVARARHKIA CHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHC GLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVAEDAPAGVLSGLAAGCHVIA CCCCCHHEEEHHHHHCCCCCCCCEEHHHHHHCCCCCHHEEECCCCHHHHHHHHCCCEEEE VNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ EECCCCCCCCCHHHHHHHHHHHHEEEEECCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 10493123 [H]