Click here to switch to the map view.

The map label for this gene is ydjA [H]

Identifier: 187732855

GI number: 187732855

Start: 1839369

End: 1839920

Strand: Reverse

Name: ydjA [H]

Synonym: SbBS512_E2020

Alternate gene names: 187732855

Gene position: 1839920-1839369 (Counterclockwise)

Preceding gene: 187732494

Following gene: 187732374

Centisome position: 39.86

GC content: 55.62

Gene sequence:

>552_bases
ATGGATGCACTCGAACTATTGATCAATCGCCGTAGCGCCTCCCGCCTGGCTGAACCCGCGCCAACGGGTGAACAACTGCA
AAACATCCTGCGTGCGGGTATGCGTGCGCCGGACCATAAGTCCATGCAACCGTGGCATTTTTTTGTGATTGAAGGGGAAG
GGCGCGAGCGTTTCAGCGCCGTACTGGAACAGGGGGCGATTGCTGCCGGTAGTGATGACAAAGCTATCGACAAAGCCCGT
AATGCGCCGTTCCGCGCACCGCTCATCATCACGGTGGTGGCGAAATGCGAAGAAAATCATAAAGTCCCGCGATGGGAACA
GGAAATGTCTGCCGGATGCGCGGTCATGGCGATGCAAATGGCAGCCGTTGCCCAGGGATTTGGCGGCATCTGGCGCAGTG
GCGCATTAACTGAAAGTCCGGTAGTGCGTGAAGCATTCGGTTGCCGTGAGCAGGATAAAATTGTCGGTTTTCTCTACCTC
GGCACGCCGCAGTTGAAAGCATCTACGTCGATTAACGTCCCGGACCCGACGCTGTTTGTAACTTATTTCTGA

Upstream 100 bases:

>100_bases
ACCCAACCGGCACTTGTCAGCAGGAATTGCGGACTGTGCTGTAACAAAATCCACTCTCGTGTTAATTTTGTGAATAAATA
TCACGACAGGAGTTAATCAA

Downstream 100 bases:

>100_bases
TAATTGTCGCGAAACTGTCTGGATTGTGAGCAAAGGCGCAGGAATTCAGACACTCTCACTTATCACTTCACGGAATGAGG
GTTACCATACCCGGATTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKAR
NAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
GTPQLKASTSINVPDPTLFVTYF

Sequences:

>Translated_183_residues
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKAR
NAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
GTPQLKASTSINVPDPTLFVTYF
>Mature_183_residues
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKAR
NAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
GTPQLKASTSINVPDPTLFVTYF

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

Organism=Escherichia coli, GI1788063, Length=183, Percent_Identity=99.4535519125683, Blast_Score=376, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: NA

Molecular weight: Translated: 20075; Mature: 20075

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSA
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHH
VLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQM
HHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEHHHCCCCCCCHHHHHHCCHHHHHHHH
AAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTLFV
HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE
TYF
EEC
>Mature Secondary Structure
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSA
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHH
VLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQM
HHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEHHHCCCCCCCHHHHHHCCHHHHHHHH
AAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTLFV
HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE
TYF
EEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]