Click here to switch to the map view.

The map label for this gene is yobD [H]

Identifier: 187732676

GI number: 187732676

Start: 1897074

End: 1897532

Strand: Direct

Name: yobD [H]

Synonym: SbBS512_E2086

Alternate gene names: 187732676

Gene position: 1897074-1897532 (Clockwise)

Preceding gene: 187733864

Following gene: 187730974

Centisome position: 41.1

GC content: 44.44

Gene sequence:

>459_bases
ATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGATCAGTTCATCATGCC
CCGCCGTAACGGCCCCACCCTGCTGGCAATTCCTTTGCTCCGGCGTGGTCGCATCGATAGCGTTATCTTCGTCGGATTGA
TTGTCATTCTTATCTATAACAACGTCACGAATCATGGTGCGTTAATAACGACATGGTTATTAAGCGCACTGGCTCTGATG
GGTTTTTATATATTCTGGATCCGCGTTCCGAAGATCATCTTTAAACAAAAAGGTTTTTTCTTCGCCAATGTCTGGATTGA
ATATAGCCTAATCAAAGCGATGAACTTGTCGGAAGATGGCGTGTTGGTGATGCAATTAGAACAGCGTCGGCTGTTAATCC
GCGTTCGAAATATCGACAATCTGGAAAAAATTTATAAGCTTATCGTTTCAACTCAATAA

Upstream 100 bases:

>100_bases
CGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCG
TTTTTTTATCTGGAGGATTA

Downstream 100 bases:

>100_bases
GTTATGAATTTAGCCAAAGCTATGTTTAGTGTATTTTTAATAATCAGACATAGCTTAGGCTATATTACCTCTTCCCTTAT
TTGTTATTTATTTTAACGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYNNVTNHGALITTWLLSALALM
GFYIFWIRVPKIIFKQKGFFFANVWIEYSLIKAMNLSEDGVLVMQLEQRRLLIRVRNIDNLEKIYKLIVSTQ

Sequences:

>Translated_152_residues
MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYNNVTNHGALITTWLLSALALM
GFYIFWIRVPKIIFKQKGFFFANVWIEYSLIKAMNLSEDGVLVMQLEQRRLLIRVRNIDNLEKIYKLIVSTQ
>Mature_151_residues
TITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMG
FYIFWIRVPKIIFKQKGFFFANVWIEYSLIKAMNLSEDGVLVMQLEQRRLLIRVRNIDNLEKIYKLIVSTQ

Specific function: Unknown

COG id: COG4811

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0266 family [H]

Homologues:

Organism=Escherichia coli, GI1788123, Length=152, Percent_Identity=98.0263157894737, Blast_Score=296, Evalue=6e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009328
- ProDom:   PD091196 [H]

Pfam domain/function: PF06173 DUF986 [H]

EC number: NA

Molecular weight: Translated: 17572; Mature: 17440

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
NVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFANVWIEYSLIKAMNLSEDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCC
VLVMQLEQRRLLIRVRNIDNLEKIYKLIVSTQ
EEEEEEHHHHHHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
TITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
NVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFANVWIEYSLIKAMNLSEDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCC
VLVMQLEQRRLLIRVRNIDNLEKIYKLIVSTQ
EEEEEEHHHHHHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA