| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is 187732537
Identifier: 187732537
GI number: 187732537
Start: 1769544
End: 1770428
Strand: Direct
Name: 187732537
Synonym: SbBS512_E1933
Alternate gene names: NA
Gene position: 1769544-1770428 (Clockwise)
Preceding gene: 187730037
Following gene: 187734082
Centisome position: 38.34
GC content: 55.14
Gene sequence:
>885_bases ATGGCTAATGAAAAAAAGACATCCCGCAAAAAGTTTCGCGTGGCTGTCTCCGGATCAACTGTTGATGGCCGTGAAATCAG TCCGGTGCATCTGCGTGAAGCCGCCGAGAACTTCAACCCGGATGTTTACGCTGCCCGCGTGAACGTTGAGCACTATCTCT CGCCATGCCCGTCAAGCGAATTTTCCGCAATGGGCGATGTCACCGCACTGAGTACGGAAGACATTACGGAAGGTCCGCTG GCCGGACGTACTGCGCTGTATGCAGAAATCGAACCGACCGAGCGCATGAAGCAGCTTGTTGCGGACGGCAAGAAAATCTA TTCCAGTATCGAACTGCACCCGCAGTTCTCCGTTAACGGGCGCGCCTATCTGGTCGGGCTGGCGATGACCGACACCCCGG CAAGCCTGGGCACTGAGCGCCTGAAATTCACGGCACAGCAACGTCAGGCGGTGATGACGTTTAACAGTATCCAGGGTGAA GGAGAAGGACGAATGAGCAACACATTTAAATTCAGCAGCCGGAGCGAAAAGAATTTGCAGGGTATAAATCCTGATCTGGT GAAAGTGACCCGACGGGCACTGGAAATCTCGGAAGTGGATTTTGGTATCACCGAAGGGTTGCGCAGCCGTTACCGCCAGA AGCAACTGGTGGCCACGGGTAAGAGCCAGACCATGAACAGCCGCCACCTTACGGGGCATGCCGTGGATGTTGTGGCTTAT ATCGGCAGCCAGGTGTCATGGGAATGGCCGCTGTACGAAAAAATCGCAGCAGCATTCAGACAGGCCAGCCGGGAACTGAA TATTCCGGTGGAATGGGGCGGCGACTGGAAGACCCTGAAAGACGGACCGCATTTTCAGTTACCACACGGAGCCTATCCGG CATGA
Upstream 100 bases:
>100_bases AACCCTCAGTTCTGGCCGTTTTCTTACAACAAAAGCCCTTTGTATCAGCCTGTTACGCTTTGCCATCATGACTGAAGAAC CAGTCAGAGGGGCAAAAACT
Downstream 100 bases:
>100_bases AGCTCTGGCCCACGCTTGGCGTCGCTTTCCTTCTGACTGCCGGATGGGGAACATCCATGCGTCTGTCGTGGTCGCTGGGC CGGGAGAACGCCAGAAACGA
Product: phage capsid scaffolding protein (GpO)
Products: NA
Alternate protein names: Capsid Scaffolding; Capsid Scaffolding Protein; Phage Capsid Scaffolding; Phage Endolysin; Capsid Scaffolding Protein O; Phage-Related Protein; Endolysin; Phage Capsid Scaffolding Protein GpO; Bacteriophage P7 Related Protein; Phagelysin; Phage Protein; Phage-Related Capsid Scaffolding Protein; V Protein Bacteriophage; Lysozyme; Scaffold Protein; Presumed Capsid-Scaffolding Protein; Bacteriophage Protein; Bacteriophage P2 GPO Capsid Protein; Scaffold; Capsid Protein; Presumed Capsid Scaffolding Protein; Peptidase; Capsid Scafolding Protein; Phage-Related Capsid Scaffold Protein; Phage-Related Capsid Scaffold Bacteriophage Protein; Phage P2 Capsid Scaffolding GpO-Like Protein; Prophage Capsid Scaffolding Protein; Flagellar Biosynthesis/Type III Secretory Pathway Protein
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MANEKKTSRKKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEHYLSPCPSSEFSAMGDVTALSTEDITEGPL AGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGE GEGRMSNTFKFSSRSEKNLQGINPDLVKVTRRALEISEVDFGITEGLRSRYRQKQLVATGKSQTMNSRHLTGHAVDVVAY IGSQVSWEWPLYEKIAAAFRQASRELNIPVEWGGDWKTLKDGPHFQLPHGAYPA
Sequences:
>Translated_294_residues MANEKKTSRKKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEHYLSPCPSSEFSAMGDVTALSTEDITEGPL AGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGE GEGRMSNTFKFSSRSEKNLQGINPDLVKVTRRALEISEVDFGITEGLRSRYRQKQLVATGKSQTMNSRHLTGHAVDVVAY IGSQVSWEWPLYEKIAAAFRQASRELNIPVEWGGDWKTLKDGPHFQLPHGAYPA >Mature_293_residues ANEKKTSRKKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEHYLSPCPSSEFSAMGDVTALSTEDITEGPLA GRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEG EGRMSNTFKFSSRSEKNLQGINPDLVKVTRRALEISEVDFGITEGLRSRYRQKQLVATGKSQTMNSRHLTGHAVDVVAYI GSQVSWEWPLYEKIAAAFRQASRELNIPVEWGGDWKTLKDGPHFQLPHGAYPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32611; Mature: 32480
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANEKKTSRKKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEHYLSPCPSSE CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCCH FSAMGDVTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNG HHHCCCEEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCHHHHHHHEEECEEEECCC RAYLVGLAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEGEGRMSNTFKFSSRSEKNLQ EEEEEEEEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC GINPDLVKVTRRALEISEVDFGITEGLRSRYRQKQLVATGKSQTMNSRHLTGHAVDVVAY CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH IGSQVSWEWPLYEKIAAAFRQASRELNIPVEWGGDWKTLKDGPHFQLPHGAYPA HCCCCEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEECCCCCCCC >Mature Secondary Structure ANEKKTSRKKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEHYLSPCPSSE CCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCCH FSAMGDVTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNG HHHCCCEEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCHHHHHHHEEECEEEECCC RAYLVGLAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEGEGRMSNTFKFSSRSEKNLQ EEEEEEEEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC GINPDLVKVTRRALEISEVDFGITEGLRSRYRQKQLVATGKSQTMNSRHLTGHAVDVVAY CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH IGSQVSWEWPLYEKIAAAFRQASRELNIPVEWGGDWKTLKDGPHFQLPHGAYPA HCCCCEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA