| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is ydjM [H]
Identifier: 187732483
GI number: 187732483
Start: 1802717
End: 1803307
Strand: Direct
Name: ydjM [H]
Synonym: SbBS512_E1973
Alternate gene names: 187732483
Gene position: 1802717-1803307 (Clockwise)
Preceding gene: 187731237
Following gene: 187732954
Centisome position: 39.05
GC content: 51.1
Gene sequence:
>591_bases ATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGC ACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTC TTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCG GTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGT GCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGTTCCCCTGCTCTGGCCATGCCGCTGGCGTT TCCGCTTGCCGATCCTAGTTCCCCAAAAGGGCAACCAACTGGAACGTTTTATCTGCATGGCATTATTTGTCTGGTCGGTA TGGATGCCCCATTCATTACCCGAGAACAGCGCTGTTCGTTGGTCATCGCAAATAATCAATACCTTGCAGATCCAGTTTCA TCGGCTTATTAAGCATCAGGTTGAATACTAA
Upstream 100 bases:
>100_bases ATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTAACCACTTCCGTGCACTGTATAAAAATCCTATACTGTACGTATCG ACAGTTTAGTGAGTTTTATC
Downstream 100 bases:
>100_bases AAAGACAAAAATCACCTTTCTGGAATAAGCAATTTCATTTGAATATAAGAGCCAGCTCACAGTTCTGTTAATCTTGCGCC AACACTATGACTGCTACGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLA VFALLATFYLKVPEGWFIPADALQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSV WMPHSLPENSAVRWSSQIINTLQIQFHRLIKHQVEY
Sequences:
>Translated_196_residues MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLA VFALLATFYLKVPEGWFIPADALQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSV WMPHSLPENSAVRWSSQIINTLQIQFHRLIKHQVEY >Mature_195_residues TAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAV FALLATFYLKVPEGWFIPADALQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSVW MPHSLPENSAVRWSSQIINTLQIQFHRLIKHQVEY
Specific function: Unknown
COG id: COG1988
COG function: function code R; Predicted membrane-bound metal-dependent hydrolases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yvsG [H]
Homologues:
Organism=Escherichia coli, GI226510947, Length=196, Percent_Identity=99.4897959183673, Blast_Score=399, Evalue=1e-113,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007404 - InterPro: IPR016956 [H]
Pfam domain/function: PF04307 DUF457 [H]
EC number: NA
Molecular weight: Translated: 22333; Mature: 22202
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSFLGQRLKW CCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH ISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADALQGMVLGYLSHILADMLT HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHC PAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSVWMPHSLPENSAVRWSSQIIN CCCCCEEECCCEEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH TLQIQFHRLIKHQVEY HHHHHHHHHHHHHCCC >Mature Secondary Structure TAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSFLGQRLKW CCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH ISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADALQGMVLGYLSHILADMLT HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHC PAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSVWMPHSLPENSAVRWSSQIIN CCCCCEEECCCEEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH TLQIQFHRLIKHQVEY HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]