| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is 187732173
Identifier: 187732173
GI number: 187732173
Start: 2037060
End: 2038079
Strand: Direct
Name: 187732173
Synonym: SbBS512_E2240
Alternate gene names: NA
Gene position: 2037060-2038079 (Clockwise)
Preceding gene: 187733242
Following gene: 187730344
Centisome position: 44.13
GC content: 50.98
Gene sequence:
>1020_bases ATGAAATATACACCGGTTGGCGTTGATATCGCAAAACATGTCATTCAGATTCACTTCATCAATGAGCACACAGGTGAAGT GGTTGATAAACAGTTGCGTAGACAGGATTTTCTGACGTTCTTCGGCAACCGTGAGCCATGCCTGATTGGTATGGAGGCCT GTGGAGGTTCTCAGCACTGGGCACGGGAACTGACAAAACTTGGTCATAAAGTTCGGTTGTTGCAGGCCCGCTTCGTTAAG GCATTCGTCATGGGCAATAAGAATGATGTGATGGATGCCCGGGCTATCTGGATGGCGGTTCAGCAGCCGGGTAAAGAAAT CGCCGTAAAAACAGAAGAACAGCAGTCGGTACTGGTTCTGCACCGTACCCGCATGCAACTGGTGAAGTTCCGGACCGCAC AAATTAATGCCCTGCACGGGACGTTACTGGAGTTTGGTGAAACCATCCACAAAGGCCGGGCAGCGATGGAGCGGGAGTTC CCCGAAGCACTGGAACGGATGAAAGAGAGACTGCCACCGTATCTCATTATGGTTCTGGAAAACCAGTACAACCGACTGAA TGAGCTGGACTCACTGATAGAGGATATTGAAAAACAGCTTACCAGCGTGGCGAGGCAGAATGAAACCTGTAAGCGGTTGC TGGATATTCCTGGCGTTGGACCACTTATTGCGACGGCAGCGGTGGCCACCATGGGGGAAGCATCAGCGTTTAAATCGGGG CGAGAGTTCGCCGCATATGTTGGTCTGGTTCCAAAACAAACAGGCTCCGGAGGGAAAGTACGTCTGCTGGGGATAAGCAA ACGTGGTGACACTTATCTCAGGACATTATTTATCCACGGTGCAAGAGCGGTGGCATTAGTAGCTAAAGAGCCTGGCCCGT GGATAACCGAACTGAAAAAACGTCGTCCAGCCAGTGTGGCAATCGTCGCCATGGCAAACAAGCTGGCACGAACAGTATGG GCGATAACCGCCCATGACCGTAAGTATGACAGGAACCACGTCAGTATCAGACCATATTAA
Upstream 100 bases:
>100_bases TAAAAGGGTGAAACTGGCAGGTGTGGAGCCTCGCAGATTTCCGGCATCATAGTGCCCAATACGGGATGCATAAAGCTCCC TCAGACTGGAGACTCCACAA
Downstream 100 bases:
>100_bases TCGCTGATACCATTAAACAATGAACTCTTAACAAAAGGGTGAATGCTGAAAGGTTGCTATGGCGGCCAGAGTGATGACAA AGACAGGTAAGACCGTGACT
Product: transposase, IS1111 family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MKYTPVGVDIAKHVIQIHFINEHTGEVVDKQLRRQDFLTFFGNREPCLIGMEACGGSQHWARELTKLGHKVRLLQARFVK AFVMGNKNDVMDARAIWMAVQQPGKEIAVKTEEQQSVLVLHRTRMQLVKFRTAQINALHGTLLEFGETIHKGRAAMEREF PEALERMKERLPPYLIMVLENQYNRLNELDSLIEDIEKQLTSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSG REFAAYVGLVPKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKKRRPASVAIVAMANKLARTVW AITAHDRKYDRNHVSIRPY
Sequences:
>Translated_339_residues MKYTPVGVDIAKHVIQIHFINEHTGEVVDKQLRRQDFLTFFGNREPCLIGMEACGGSQHWARELTKLGHKVRLLQARFVK AFVMGNKNDVMDARAIWMAVQQPGKEIAVKTEEQQSVLVLHRTRMQLVKFRTAQINALHGTLLEFGETIHKGRAAMEREF PEALERMKERLPPYLIMVLENQYNRLNELDSLIEDIEKQLTSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSG REFAAYVGLVPKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKKRRPASVAIVAMANKLARTVW AITAHDRKYDRNHVSIRPY >Mature_339_residues MKYTPVGVDIAKHVIQIHFINEHTGEVVDKQLRRQDFLTFFGNREPCLIGMEACGGSQHWARELTKLGHKVRLLQARFVK AFVMGNKNDVMDARAIWMAVQQPGKEIAVKTEEQQSVLVLHRTRMQLVKFRTAQINALHGTLLEFGETIHKGRAAMEREF PEALERMKERLPPYLIMVLENQYNRLNELDSLIEDIEKQLTSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSG REFAAYVGLVPKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKKRRPASVAIVAMANKLARTVW AITAHDRKYDRNHVSIRPY
Specific function: Required for the transposition of an insertion element (Potential) [H]
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 20 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003583 - InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 38197; Mature: 38197
Theoretical pI: Translated: 10.44; Mature: 10.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYTPVGVDIAKHVIQIHFINEHTGEVVDKQLRRQDFLTFFGNREPCLIGMEACGGSQHW CCCCCCCHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCCHHH ARELTKLGHKVRLLQARFVKAFVMGNKNDVMDARAIWMAVQQPGKEIAVKTEEQQSVLVL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH HRTRMQLVKFRTAQINALHGTLLEFGETIHKGRAAMEREFPEALERMKERLPPYLIMVLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC NQYNRLNELDSLIEDIEKQLTSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSG HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCC REFAAYVGLVPKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKK HHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCEEEEEEECCCCCHHHHHHH RRPASVAIVAMANKLARTVWAITAHDRKYDRNHVSIRPY CCCCCEEHHHHHHHHHHHHHEEEECCCCCCCCCEEECCC >Mature Secondary Structure MKYTPVGVDIAKHVIQIHFINEHTGEVVDKQLRRQDFLTFFGNREPCLIGMEACGGSQHW CCCCCCCHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCCHHH ARELTKLGHKVRLLQARFVKAFVMGNKNDVMDARAIWMAVQQPGKEIAVKTEEQQSVLVL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH HRTRMQLVKFRTAQINALHGTLLEFGETIHKGRAAMEREFPEALERMKERLPPYLIMVLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC NQYNRLNELDSLIEDIEKQLTSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSG HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCC REFAAYVGLVPKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKK HHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCEEEEEEECCCCCHHHHHHH RRPASVAIVAMANKLARTVWAITAHDRKYDRNHVSIRPY CCCCCEEHHHHHHHHHHHHHEEEECCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]