Click here to switch to the map view.

The map label for this gene is yfdO [C]

Identifier: 187732025

GI number: 187732025

Start: 1961697

End: 1962521

Strand: Reverse

Name: yfdO [C]

Synonym: SbBS512_E2159

Alternate gene names: 187732025

Gene position: 1962521-1961697 (Counterclockwise)

Preceding gene: 187732951

Following gene: 187732252

Centisome position: 42.52

GC content: 49.82

Gene sequence:

>825_bases
ATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGAAATCCATTGCGAAAACTGGTTCTGATTAAGCTGGC
TGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTG
TGATGAATCATATTGCGGCCCTTTGTGAGTCCGGGCGGGTAAAAAAAGTCACCCGGAAAGGTGAAAAAGGTAACTCAAGT
AATATCTATCTCCTTCATCTTGATGGTGCAGGAGATTCACTAGGGGGTAGTGCAAATAATTCACTATCTGGTGCAGCAAA
TTCACCAGGTAGTGCAGGAGTTGCACCAAGGGGTAGTGCAGGAGATTCACCCAGAACCAGTCACTCTTTTGAACCAGTCA
AAGAACCAGTCAATGAACCAATAGCTGTTGGTGCATCAGTTGATGAGTCCGTGCGAGTTCGTTCAAACCGACCGGAATAC
TCTCCGGAGTTTGAGCAGGCATGGCTGGCATATCCCAAACGTGCTGGTGGCAATTCAAAATCTGCAGCCTTCAAAGCCTG
GAAAGCCCGTTTGAACGAGGGGGTAAACCCCGAAACCATGCTGGAAGGTGTGAAACGCTACGCGGGCTGGGTATCTGCGA
TGGGCAATAGCGGCACACAATTTGTGAAACAGGCTGTCACGTTCTTTGGTCCAGATCGTCATTTCGAAGAATCCTGGGAA
GTTCCTGCGGTATCTGCAGCCAGACGCGAGGACCCGTACTTCAAAGCCAGTTACGACAACGTGGACTACAGCCAGATCCC
GGCAGGATTCAGGGGGGGATTATGA

Upstream 100 bases:

>100_bases
AGAAGGTGATTTGTGAACCGCTGGGCCGTAATTACCGCATCAGTATGCCGCTTATAGCCTTTCGCTCCGGAAAAAACATG
AAGCATCTCGGAGGTGCTGC

Downstream 100 bases:

>100_bases
GTCTTTTGAATGAAGTTCAGAAATTCATTGAAGCCCATCCGGGGTGTACTTCCGGAGACATTGCGGATGCTTTTGCAGGT
TACTCACGGCAGTGCGTTCT

Product: replication protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSMELMVKAMKIRVGNPLRKLVLIKLADNASDQGECWPSYQHIADQCEISKRSVMNHIAALCESGRVKKVTRKGEKGNSS
NIYLLHLDGAGDSLGGSANNSLSGAANSPGSAGVAPRGSAGDSPRTSHSFEPVKEPVNEPIAVGASVDESVRVRSNRPEY
SPEFEQAWLAYPKRAGGNSKSAAFKAWKARLNEGVNPETMLEGVKRYAGWVSAMGNSGTQFVKQAVTFFGPDRHFEESWE
VPAVSAARREDPYFKASYDNVDYSQIPAGFRGGL

Sequences:

>Translated_274_residues
MSMELMVKAMKIRVGNPLRKLVLIKLADNASDQGECWPSYQHIADQCEISKRSVMNHIAALCESGRVKKVTRKGEKGNSS
NIYLLHLDGAGDSLGGSANNSLSGAANSPGSAGVAPRGSAGDSPRTSHSFEPVKEPVNEPIAVGASVDESVRVRSNRPEY
SPEFEQAWLAYPKRAGGNSKSAAFKAWKARLNEGVNPETMLEGVKRYAGWVSAMGNSGTQFVKQAVTFFGPDRHFEESWE
VPAVSAARREDPYFKASYDNVDYSQIPAGFRGGL
>Mature_273_residues
SMELMVKAMKIRVGNPLRKLVLIKLADNASDQGECWPSYQHIADQCEISKRSVMNHIAALCESGRVKKVTRKGEKGNSSN
IYLLHLDGAGDSLGGSANNSLSGAANSPGSAGVAPRGSAGDSPRTSHSFEPVKEPVNEPIAVGASVDESVRVRSNRPEYS
PEFEQAWLAYPKRAGGNSKSAAFKAWKARLNEGVNPETMLEGVKRYAGWVSAMGNSGTQFVKQAVTFFGPDRHFEESWEV
PAVSAARREDPYFKASYDNVDYSQIPAGFRGGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29626; Mature: 29495

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMELMVKAMKIRVGNPLRKLVLIKLADNASDQGECWPSYQHIADQCEISKRSVMNHIAA
CCHHHHHHHHHHHCCCHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LCESGRVKKVTRKGEKGNSSNIYLLHLDGAGDSLGGSANNSLSGAANSPGSAGVAPRGSA
HHCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GDSPRTSHSFEPVKEPVNEPIAVGASVDESVRVRSNRPEYSPEFEQAWLAYPKRAGGNSK
CCCCCCCCCCCHHHHHCCCCEEECCCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCH
SAAFKAWKARLNEGVNPETMLEGVKRYAGWVSAMGNSGTQFVKQAVTFFGPDRHFEESWE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCC
VPAVSAARREDPYFKASYDNVDYSQIPAGFRGGL
CCCHHHHHCCCCCEEECCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
SMELMVKAMKIRVGNPLRKLVLIKLADNASDQGECWPSYQHIADQCEISKRSVMNHIAA
CHHHHHHHHHHHCCCHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LCESGRVKKVTRKGEKGNSSNIYLLHLDGAGDSLGGSANNSLSGAANSPGSAGVAPRGSA
HHCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GDSPRTSHSFEPVKEPVNEPIAVGASVDESVRVRSNRPEYSPEFEQAWLAYPKRAGGNSK
CCCCCCCCCCCHHHHHCCCCEEECCCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCH
SAAFKAWKARLNEGVNPETMLEGVKRYAGWVSAMGNSGTQFVKQAVTFFGPDRHFEESWE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCC
VPAVSAARREDPYFKASYDNVDYSQIPAGFRGGL
CCCHHHHHCCCCCEEECCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA