Click here to switch to the map view.

The map label for this gene is ydiR [H]

Identifier: 187731845

GI number: 187731845

Start: 1742037

End: 1742975

Strand: Direct

Name: ydiR [H]

Synonym: SbBS512_E1901

Alternate gene names: 187731845

Gene position: 1742037-1742975 (Clockwise)

Preceding gene: 187733951

Following gene: 187731234

Centisome position: 37.74

GC content: 53.25

Gene sequence:

>939_bases
ATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATG
GGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCAAAATGTATTTATG
TTCTTGAGCAAAACGACGCGCTGCAACGCACTGAAAATTACGCCGAAAGCATTGCTGCCCCGCTGAAAGATAAACACCCC
GCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCTCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGT
GAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTC
AGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCAT
AAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAG
CAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCATGGTCTGGCGGCGCAGGATGACCTGAAAATGGTCC
ACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAA
CGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATAT
GGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAATTATGCCGACTACG
GCCTGGTGGGCGATATCTACAAAGTCGTCCCTGCCCTGATTAGCCAGTTGAGCCGCTAA

Upstream 100 bases:

>100_bases
CGTAAGCACATCATTATCGATAACGATTCGCCGGAGGCCATTACCGAGCTGGCGGAACATCTGAAGAAAGCCCTGAACTG
AAGCCTACGGAGAAGAAACG

Downstream 100 bases:

>100_bases
TTCCCCTTTCAACCACATCTCCCGCTGTAAACGCAGCGGGAAGGGAGCATAACGCATGTCGGATAACAAATTTGATGCCA
TTGTGGTCGGTGCGGACGTT

Product: electron transfer flavoprotein subunit YdiR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCIYVLEQNDALQRTENYAESIAAPLKDKHP
AMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSH
KCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGHGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE
RYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR

Sequences:

>Translated_312_residues
MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCIYVLEQNDALQRTENYAESIAAPLKDKHP
AMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSH
KCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGHGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE
RYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR
>Mature_311_residues
SQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCIYVLEQNDALQRTENYAESIAAPLKDKHPA
MLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSHK
CPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGHGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERER
YIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR

Specific function: May play a role in a redox process [H]

COG id: COG2025

COG function: function code C; Electron transfer flavoprotein, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF alpha-subunit/fixB family [H]

Homologues:

Organism=Homo sapiens, GI189181759, Length=226, Percent_Identity=30.5309734513274, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI4503607, Length=226, Percent_Identity=30.5309734513274, Blast_Score=110, Evalue=1e-24,
Organism=Escherichia coli, GI1787990, Length=312, Percent_Identity=98.3974358974359, Blast_Score=633, Evalue=0.0,
Organism=Escherichia coli, GI1786226, Length=315, Percent_Identity=44.7619047619048, Blast_Score=273, Evalue=1e-74,
Organism=Escherichia coli, GI87082157, Length=246, Percent_Identity=29.2682926829268, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17506929, Length=327, Percent_Identity=29.3577981651376, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6325261, Length=125, Percent_Identity=42.4, Blast_Score=99, Evalue=1e-21,
Organism=Drosophila melanogaster, GI17136898, Length=231, Percent_Identity=30.3030303030303, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24652801, Length=231, Percent_Identity=30.3030303030303, Blast_Score=102, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001308
- InterPro:   IPR014730
- InterPro:   IPR014731
- InterPro:   IPR018206
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF; PF00766 ETF_alpha [H]

EC number: NA

Molecular weight: Translated: 33793; Mature: 33662

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS00696 ETF_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCIYVLEQNDA
CCCCCCEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEECCCH
LQRTENYAESIAAPLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHI
HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEEEECCCEEEEEECCCH
CAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSHKCPTETVPYVAPRHEILCRE
HHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RRAKAASSVDLSKAKRVVGVGHGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE
HHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
RYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIY
HHCCCCEEEEECCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCCHHHHHH
KVVPALISQLSR
HHHHHHHHHHCC
>Mature Secondary Structure 
SQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCIYVLEQNDA
CCCCCEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEECCCH
LQRTENYAESIAAPLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHI
HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEEEECCCEEEEEECCCH
CAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSHKCPTETVPYVAPRHEILCRE
HHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RRAKAASSVDLSKAKRVVGVGHGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE
HHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
RYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIY
HHCCCCEEEEECCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCCHHHHHH
KVVPALISQLSR
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]