| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is yfiP [H]
Identifier: 187731535
GI number: 187731535
Start: 2759980
End: 2760678
Strand: Reverse
Name: yfiP [H]
Synonym: SbBS512_E2953
Alternate gene names: 187731535
Gene position: 2760678-2759980 (Counterclockwise)
Preceding gene: 187730887
Following gene: 187731968
Centisome position: 59.81
GC content: 51.93
Gene sequence:
>699_bases ATGACCGAAAACGCTGTTCTCCAGTTACGCACCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTAATCG CGTTCGTCGCTGCCAACGCTGTCTTTTGCCAGAGAAATTATGTCTCTGTTCGACAATTACCCCAGCACAAGCAAAAAGTC GCTTCTGTTTGCTGATGTTCGACACCGAGCCAATGAAGCCCAGTAATACCGGGCGTCTGATTGCTGATATTTTGCCTGAT ACCGTTGCGTTTCAATGGTCGCGTACCGAACCCTCGCAGGATTTGCTGGATCTGGTACAAAACCCGGATTATCAGCCAAT GGTGGTCTTTCCCGCCTCGTATGCTGATGAGCAACGGGAAGTGATCTTCACACCACCTGCCGGTAAGCCACCGCTGTTTA TCATGCTCGATGGTACCTGGCCGGAAGCTCGCAAGATGTTTCGTAAAAGTCCGTATCTGGATAATCTTCCCGTCATTTCC GTCGATCTTTCCCGGCTTTCTGCCTATCGCCTGCGTGAAGCCCAGGCTGAAGGCCAATATTGTACTGCCGAGGTAGCCAT CGCACTGTTAGATATGGCCGGCGATACCGGGGCGGCAGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATC TGGCAGGAAAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAA
Upstream 100 bases:
>100_bases CGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGTTTTCTCCTCTGCGACAATGG CGTTTTTTCGACGCTCTCTT
Downstream 100 bases:
>100_bases AATCATTCGGTCACTTCTGCGGGAGACCGGTATGAGTCAGCGAGGACTGGAAGCACTACTGCGACCAAAATCGATAGCGG TAATTGGCGCGTCGATGAAA
Product: DTW domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MTENAVLQLRTERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPD TVAFQWSRTEPSQDLLDLVQNPDYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVIS VDLSRLSAYRLREAQAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV
Sequences:
>Translated_232_residues MTENAVLQLRTERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPD TVAFQWSRTEPSQDLLDLVQNPDYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVIS VDLSRLSAYRLREAQAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV >Mature_231_residues TENAVLQLRTERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDT VAFQWSRTEPSQDLLDLVQNPDYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVISV DLSRLSAYRLREAQAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV
Specific function: Unknown
COG id: COG3148
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTW family [H]
Homologues:
Organism=Escherichia coli, GI87082133, Length=232, Percent_Identity=99.1379310344828, Blast_Score=476, Evalue=1e-136,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005636 [H]
Pfam domain/function: PF03942 DTW [H]
EC number: NA
Molecular weight: Translated: 26011; Mature: 25880
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTENAVLQLRTERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAKSRFCLLMF CCCCHHEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEEEE DTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLDLVQNPDYQPMVVFPASYADEQRE CCCCCCCCCCCCCHHHHCCCHHEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCC VIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVISVDLSRLSAYRLREAQAEGQY EEEECCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCC CTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC >Mature Secondary Structure TENAVLQLRTERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAKSRFCLLMF CCCHHEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEEEE DTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLDLVQNPDYQPMVVFPASYADEQRE CCCCCCCCCCCCCHHHHCCCHHEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCC VIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVISVDLSRLSAYRLREAQAEGQY EEEECCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCC CTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]