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The map label for this gene is yddQ

Identifier: 187731429

GI number: 187731429

Start: 1583741

End: 1584625

Strand: Reverse

Name: yddQ

Synonym: SbBS512_E1748

Alternate gene names: 187731429

Gene position: 1584625-1583741 (Counterclockwise)

Preceding gene: 187730477

Following gene: 187731891

Centisome position: 34.33

GC content: 53.56

Gene sequence:

>885_bases
ATGATGCTAAGCGAGGAAACGTCCGCCGTACGCCCACAAAAACAAACGCGATTTAACGGTGCAAAACTGGTATGGATGCT
GAAAGGCAGTCCGCTCACCGTGACCGGCGCAGTCATCATTGTATTAATGCTATTGATGATGTTTTTTTCACCGTGGCTTG
CGACGCATGATCCCAACGCCATTGATTTAACCGCCCGCCTTTTGCCGCCTTCTGCGGCGCACTGGTTTGGCACCGATGAA
GTGGGACGCGATCTGTTCAGCCGCGTACTGGTCGGCAGTCAGCAATCAATTCTCGCCGGATTAGTCGTGGTTGCCATTGC
GGGTATGATTGGTTCGCTACTCGGTGTGCTTGGCGGACGCGCAGACGCCATCATCATGCGCATCATGGACATTATGCTGT
CGATTCCTTCGTTGGTACTGACAATGGCACTGGCTGCCGCTCTCGGGCCGAGTTTATTTAACGCCATGCTGGCGATTGCT
ATTGTGCGAATTCCCTTTTATGTGCGCCTGGCGCGGGGGCAAGCATTAGTTGTACGCCAGTATACCTATGTTCAGGCGGC
GAAAACCTTTGGTGCGTCGCGTTGGCATCTGATCAGCTGGCATATTTTACGTAACTCCCTGCCGCCGCTGATCGTGCAGG
CATCGCTGGATATCGGTAGCGCGATTTTAATGGCCGCCACGTTGGGATTTATTGGCCTGGGTGCTCAACAACCGAGTGCT
GAATGGGGCGCGATGGTAGCGAATGGTCGCAACTATGTACTCGATCAGTGGTGGTATTGCGCATTTCCGGGGGCAGCGAT
TTTGCTTACCGCCGTTGGGTTTAATCTCTTTGGTGATGGTATTCGCGATCTGCTTGACCCGAAAGCAGGAGGAAAGCAGT
CATGA

Upstream 100 bases:

>100_bases
GCTTTGCCGTCGTGGTTTCATTTGCTTATGTGCTGGTCAACCTGGTGGTGGATTTGCTCTATTTGTGGATTGATCCGCGT
ATCGGACGTGGAGGTGGTGA

Downstream 100 bases:

>100_bases
CCCAGCCCGTTCTGGACATTCAACAGCTGCATTTGAGTTTCCCCGGTTTTAACGGTGATGTTCACGCGCTCAACAATGTG
TCCTTGCAGATTAACCGCGG

Product: ATP-dependent peptide transporter membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MMLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTGAVIIVLMLLMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDE
VGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIA
IVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSA
EWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS

Sequences:

>Translated_294_residues
MMLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTGAVIIVLMLLMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDE
VGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIA
IVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSA
EWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS
>Mature_294_residues
MMLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTGAVIIVLMLLMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDE
VGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIA
IVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSA
EWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=298, Percent_Identity=97.6510067114094, Blast_Score=573, Evalue=1e-165,
Organism=Escherichia coli, GI1787054, Length=270, Percent_Identity=41.1111111111111, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1789964, Length=255, Percent_Identity=45.8823529411765, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=37.037037037037, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1787498, Length=261, Percent_Identity=33.7164750957854, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787549, Length=248, Percent_Identity=34.2741935483871, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=28.8888888888889, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31588; Mature: 31588

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTGAVIIVLMLLMMFFSPWLATHDPNA
CCCCCCCHHCCCCHHHCCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHCHHHCCCCCCC
IDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGVLGGR
EEEEEEECCCCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
ADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEEECCCEEEEEH
YTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSA
HHHHHHHHHCCCCCCHHEEHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCC
EWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS
CCCCEEECCCCEEHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MMLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTGAVIIVLMLLMMFFSPWLATHDPNA
CCCCCCCHHCCCCHHHCCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHCHHHCCCCCCC
IDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGVLGGR
EEEEEEECCCCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
ADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEEECCCEEEEEH
YTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSA
HHHHHHHHHCCCCCCHHEEHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCC
EWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS
CCCCEEECCCCEEHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]