| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is damX
Identifier: 187731317
GI number: 187731317
Start: 3490279
End: 3491565
Strand: Reverse
Name: damX
Synonym: SbBS512_E3765
Alternate gene names: 187731317
Gene position: 3491565-3490279 (Counterclockwise)
Preceding gene: 187731805
Following gene: 187730578
Centisome position: 75.64
GC content: 54.23
Gene sequence:
>1287_bases ATGGATGAATTCAAACCAGAAGACGAGCTGAAACCCGATCCCAGCGATCGTCGTACTGGTCGTTCTCGTCAATCTTCTGA ACGTTCTGAGCGTACTGAACGTGGCGAACCGCAGATCAATTTTGATGATATTGAACTTGATGACACTGACGATCGCCGTC CGACTCGTGCGCAAAAAGAGCGCAATGAGGAACCGGAAATCGAAGAAGAAATTGACGAATCCGAAGATGAAACCGTGGAT GAAGAGCGCGTAGAGCGTCGTCCGCGTAAGTGCAAAAAAGCAGCCAGTAAACCCGCTTCTCGTCAGTATATGATGATGGG CGTCGGCATTCTGGTTCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCTCTTCCAGCGATC AAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCAGGCAATGCGACCGATCAGGCGAATGGGGTGCAGCCAGCGCCGGGA ACCACGTCTGCGGAAAATACTCAGCAGGATGTTTCTCTGCCACCGATCTCTTCTACGCCGACTCAAGGGCAAACCCCGGC GGCAACGGATGGTCAACAACGTGTTGAAGTGCAGGGTGACCTGAACAATGCGCTGACTCAGCCACAAAATCAGCAACAGT TGAACAATGTGGCGGTCAATTCCACATTGCCGACCGAACCAGCGACTGTCGCGCCTGTTCGCAATGGCAATGCATCGCGT GACACGGCGAAAACGCAAACCGCTGAACGTCCGTCCACTACGCGCCTAGCTCGTCAGCAGGCGGTGATTGAACCGAAAAA ACCGCAAGCAACCGTGAAAACGGAGCCGAAGCCGGTAGCACAGACGCCGAAGCGTACTGAACCAGCTGCCCCTGTGGCGA GCACGAAGGCACCGGCTGCGACTTCTACGCCAGCACCAAAAGAGACGGCGACTACGGCTCCAGTACAGACGGCATCCCCG GCGCAAACCACGGCAACACCAGCCGCTGGAGGGAAGACCGCAGGTAATGTTGGTTCGTTGAAATCGGCACCGTCCAGCCA TTACACTCTGCAGCTGAGCAGTTCCTCTAACTACGACAACCTGAACGGTTGGGCGAAGAAAGAGAATCTGAAAAACTACG TTGTCTATGAAACGACGCGTAATGGTCAGCCGTGGTATGTCCTGGTTTCTGGCGTGTACGCTTCGAAAGAAGAGGCGAAA AAAGCGGTATCTACATTGCCAGCAGATGTTCAGGCCAAAAACCCGTGGGCGAAACCGCTGCGTCAGGTACAGGCCGATCT GAAGTAA
Upstream 100 bases:
>100_bases TCAGCGTAACAACAAGAAAGGTCAGGCCGCTTATCAAGCGGTCTATTAGCTTCAGGTTAATTGCAACGTGGTAAGCATTA ACCTTTTAGTGGGGTGTTAA
Downstream 100 bases:
>100_bases TCAAGGTTATCTCCCGCAATGGTTTATCGTTGCGGGAGCTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCC GGAGAAGGTGTAATTAGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDIELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVD EERVERRPRKCKKAASKPASRQYMMMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPG TTSAENTQQDVSLPPISSTPTQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASR DTAKTQTAERPSTTRLARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASP AQTTATPAAGGKTAGNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAK KAVSTLPADVQAKNPWAKPLRQVQADLK
Sequences:
>Translated_428_residues MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDIELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVD EERVERRPRKCKKAASKPASRQYMMMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPG TTSAENTQQDVSLPPISSTPTQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASR DTAKTQTAERPSTTRLARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASP AQTTATPAAGGKTAGNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAK KAVSTLPADVQAKNPWAKPLRQVQADLK >Mature_428_residues MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDIELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVD EERVERRPRKCKKAASKPASRQYMMMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPG TTSAENTQQDVSLPPISSTPTQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASR DTAKTQTAERPSTTRLARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASP AQTTATPAAGGKTAGNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAK KAVSTLPADVQAKNPWAKPLRQVQADLK
Specific function: Directly or indirectly interferes with cell division [H]
COG id: COG3266
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789790, Length=428, Percent_Identity=98.8317757009346, Blast_Score=844, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007730 [H]
Pfam domain/function: PF05036 SPOR [H]
EC number: NA
Molecular weight: Translated: 46069; Mature: 46069
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDIELDDTDDRRPTRAQKE CCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHH RNEEPEIEEEIDESEDETVDEERVERRPRKCKKAASKPASRQYMMMGVGILVLLLLIIGI CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC GSALKAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAENTQQDVSLPPISSTP CHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASR CCCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHEEECCCCCCCCCEEEEECCCCCCC DTAKTQTAERPSTTRLARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAA HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSAPSSHYTLQLSSSSNYDN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC LNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPL CCCHHHHHCCCCEEEEEECCCCCCEEEEEECCHHCHHHHHHHHHHCCCCCCCCCHHHHHH RQVQADLK HHHHHCCC >Mature Secondary Structure MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDIELDDTDDRRPTRAQKE CCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHH RNEEPEIEEEIDESEDETVDEERVERRPRKCKKAASKPASRQYMMMGVGILVLLLLIIGI CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC GSALKAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAENTQQDVSLPPISSTP CHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASR CCCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHEEECCCCCCCCCEEEEECCCCCCC DTAKTQTAERPSTTRLARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAA HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSAPSSHYTLQLSSSSNYDN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC LNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPL CCCHHHHHCCCCEEEEEECCCCCCEEEEEECCHHCHHHHHHHHHHCCCCCCCCCHHHHHH RQVQADLK HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]