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The map label for this gene is ycaL [H]

Identifier: 187731197

GI number: 187731197

Start: 2215432

End: 2216139

Strand: Reverse

Name: ycaL [H]

Synonym: SbBS512_E2419

Alternate gene names: 187731197

Gene position: 2216139-2215432 (Counterclockwise)

Preceding gene: 187733570

Following gene: 187732657

Centisome position: 48.01

GC content: 50.14

Gene sequence:

>708_bases
GTGCAAAATACCCACGGTATTGATACCAATATGGCTATCAGCTCCGGTTTAAATGCCTATAAAGCAGCAACATTAAGCGA
TGCCGATGCAAAAGCGATTGCCAATCAGGGCTGTGCCGAAATGGACAGCGGCAATCAAGTCGCAAGTAAATCCAGCAAGT
ACGGTAAACGTCTGGCAAAAATCGCCAAAGCATTGGGTAACAATATTAATGGCACGCCGGTCAACTATAAGGTTTATATG
ACCAGCGACGTCAACGCATGGGCGATGGCGAACGGCTGTGTCCGTGTCTACAGTGGCCTGATGGACATGATGAATGACAA
CGAAATTGAAGGTGTTCTGGGCCATGAACTGGGCCACGTCGCGTTGGGTCACTCGCTGGCTGAAATGAAAGCTTCTTATG
CGATCGTTGCCGCACGCGATGCCATTTCAGCTACCAGCGGTGTGGCTTCCCAGCTTTCCCGCTCACAATTGGGTGATATC
GCAGAAGGCGCTATTAATGCTAAATACTCCCGTGATAAAGAGTCCGAAGCAGATGATTTCTCCTTTGATCTGTTGAAGAA
ACGTGGCATCAGCACCCAGGGGCTGGTTGGCAGCTTTGAAAAACTGGCTAGTCTGGATGGCGGTCGCACCCAGTCCATGT
TTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAA

Upstream 100 bases:

>100_bases
TTGATACATAATGTTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACC
TCTGCAGCATTACTGACAGG

Downstream 100 bases:

>100_bases
ATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCTGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAAC
TGGTTTTTGCACACAACGTT

Product: peptidase, M48B family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MQNTHGIDTNMAISSGLNAYKAATLSDADAKAIANQGCAEMDSGNQVASKSSKYGKRLAKIAKALGNNINGTPVNYKVYM
TSDVNAWAMANGCVRVYSGLMDMMNDNEIEGVLGHELGHVALGHSLAEMKASYAIVAARDAISATSGVASQLSRSQLGDI
AEGAINAKYSRDKESEADDFSFDLLKKRGISTQGLVGSFEKLASLDGGRTQSMFDSHPPSTERAQHIRDRIASGK

Sequences:

>Translated_235_residues
MQNTHGIDTNMAISSGLNAYKAATLSDADAKAIANQGCAEMDSGNQVASKSSKYGKRLAKIAKALGNNINGTPVNYKVYM
TSDVNAWAMANGCVRVYSGLMDMMNDNEIEGVLGHELGHVALGHSLAEMKASYAIVAARDAISATSGVASQLSRSQLGDI
AEGAINAKYSRDKESEADDFSFDLLKKRGISTQGLVGSFEKLASLDGGRTQSMFDSHPPSTERAQHIRDRIASGK
>Mature_235_residues
MQNTHGIDTNMAISSGLNAYKAATLSDADAKAIANQGCAEMDSGNQVASKSSKYGKRLAKIAKALGNNINGTPVNYKVYM
TSDVNAWAMANGCVRVYSGLMDMMNDNEIEGVLGHELGHVALGHSLAEMKASYAIVAARDAISATSGVASQLSRSQLGDI
AEGAINAKYSRDKESEADDFSFDLLKKRGISTQGLVGSFEKLASLDGGRTQSMFDSHPPSTERAQHIRDRIASGK

Specific function: Unknown

COG id: COG0501

COG function: function code O; Zn-dependent protease with chaperone function

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M48B family [H]

Homologues:

Organism=Escherichia coli, GI87081800, Length=234, Percent_Identity=99.5726495726496, Blast_Score=479, Evalue=1e-136,
Organism=Escherichia coli, GI87082185, Length=227, Percent_Identity=57.7092511013216, Blast_Score=282, Evalue=2e-77,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 24883; Mature: 24883

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNTHGIDTNMAISSGLNAYKAATLSDADAKAIANQGCAEMDSGNQVASKSSKYGKRLAK
CCCCCCCCCCHHHHHCCCHHHHHHCCCHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHH
IAKALGNNINGTPVNYKVYMTSDVNAWAMANGCVRVYSGLMDMMNDNEIEGVLGHELGHV
HHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ALGHSLAEMKASYAIVAARDAISATSGVASQLSRSQLGDIAEGAINAKYSRDKESEADDF
HHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
SFDLLKKRGISTQGLVGSFEKLASLDGGRTQSMFDSHPPSTERAQHIRDRIASGK
HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQNTHGIDTNMAISSGLNAYKAATLSDADAKAIANQGCAEMDSGNQVASKSSKYGKRLAK
CCCCCCCCCCHHHHHCCCHHHHHHCCCHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHH
IAKALGNNINGTPVNYKVYMTSDVNAWAMANGCVRVYSGLMDMMNDNEIEGVLGHELGHV
HHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ALGHSLAEMKASYAIVAARDAISATSGVASQLSRSQLGDIAEGAINAKYSRDKESEADDF
HHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
SFDLLKKRGISTQGLVGSFEKLASLDGGRTQSMFDSHPPSTERAQHIRDRIASGK
HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7836281 [H]