BacMap

Definition	Shigella boydii CDC 3083-94 chromosome, complete genome.
Accession	NC_010658
Length	4,615,997

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The map label for this gene is cbiO1 [H]

Identifier: 187731193

GI number: 187731193

Start: 3125737

End: 3126447

Strand: Direct

Name: cbiO1 [H]

Synonym: SbBS512_E3358

Alternate gene names: 187731193

Gene position: 3125737-3126447 (Clockwise)

Preceding gene: 187730053

Following gene: 187732671

Centisome position: 67.72

GC content: 53.16

Gene sequence:

>711_bases
GTGGCAATTGCAAAACGGAGCGCTCCAGCCACTATGTTAACGTTAAATCAGATATCTTATCGCTGGCCTGGCGCGGCAAC
GGATTGTCTTTGCGACATTTCTCTGCAACTCAAACAAGGTGAATGGTTGGCGCTGACCGGTGACAATGGCGCAGGGAAAT
CGACGCTGTTACGAGTAATGGCAGGTCTTCTTACGCCCACAGCCGGTACGGTTATGCTGCAACAACAGGCGATGAAAAAC
CTGAAAAACCGCCAGCGCGCGGCAAAGGTTGGCGTACTGTTTCAGGAAGCGGAAAACCAACTTTTTCACAGCACCGTCGC
TGACGAGATCGCATTTGGTTTGAAACTGCAAAAATGCCCGGCGGATGAAATCACTCAACGTACCCATGCTGCCCTGCAAT
GTTGTCAGTTAGCAGACACTGCCAACTCGCACCCGTTGGATCTGCATAGTGCGCAGCGACGGATGGTCGCCATCGCCTGC
CTGGAAGCACTCTCTCCGCCACTATTACTGCTGGACGAGCCGAGTCGGGATTTTGACGAAAATTGGTTGAGCGTGTTTGA
AAGCTGGCTGGAGAAGTGCCGCCAGCGAGGCACGAGCGTGGTAGCAATCAGTCATGACGCCGCATTTACCCGGCGTCATT
TCTCTCGTGTGGTGCGACTGGAAGATGGTGTAATCAGGAACGTTAATCCACCAGACGATATTCACCCGTAG

Upstream 100 bases:

>100_bases
TGCTGTTGCAGCGCTTACAACACTGGGCGTTTGAACGTGGTTCGCTGATTATTCTTTTTGAACGTCATCGCACACCTTTC
CTGAACTACTGCCAGCAAGC

Downstream 100 bases:

>100_bases
CGGTCATCATTAAGGTCAAATTTGCAGGCAGACTCTCTTCCAGCACCCGGCGAACATTCGGCCCGTCGGTACGGTCATAA
AAGGCTTCTGCATCTGCCAG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MAIAKRSAPATMLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKSTLLRVMAGLLTPTAGTVMLQQQAMKN
LKNRQRAAKVGVLFQEAENQLFHSTVADEIAFGLKLQKCPADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAIAC
LEALSPPLLLLDEPSRDFDENWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVNPPDDIHP

Sequences:

>Translated_236_residues
MAIAKRSAPATMLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKSTLLRVMAGLLTPTAGTVMLQQQAMKN
LKNRQRAAKVGVLFQEAENQLFHSTVADEIAFGLKLQKCPADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAIAC
LEALSPPLLLLDEPSRDFDENWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVNPPDDIHP
>Mature_235_residues
AIAKRSAPATMLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKSTLLRVMAGLLTPTAGTVMLQQQAMKNL
KNRQRAAKVGVLFQEAENQLFHSTVADEIAFGLKLQKCPADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAIACL
EALSPPLLLLDEPSRDFDENWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVNPPDDIHP

Specific function: Part of the ABC transporter complex CbiONQ involved in cobalt import. Responsible for energy coupling to the transport system [H]

COG id: COG1118

COG function: function code P; ABC-type sulfate/molybdate transport systems, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4505771, Length=232, Percent_Identity=28.8793103448276, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI9961252, Length=232, Percent_Identity=28.8793103448276, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI9961250, Length=239, Percent_Identity=28.0334728033473, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI42741659, Length=222, Percent_Identity=26.5765765765766, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI255708477, Length=220, Percent_Identity=26.3636363636364, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI148612844, Length=206, Percent_Identity=26.6990291262136, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI27262624, Length=163, Percent_Identity=24.5398773006135, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI27262626, Length=163, Percent_Identity=24.5398773006135, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=33.6448598130841, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1787370, Length=212, Percent_Identity=34.4339622641509, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=35.8139534883721, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI87081791, Length=233, Percent_Identity=32.618025751073, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789873, Length=215, Percent_Identity=30.2325581395349, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790467, Length=206, Percent_Identity=31.0679611650485, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789032, Length=208, Percent_Identity=29.8076923076923, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786398, Length=207, Percent_Identity=29.951690821256, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87082267, Length=225, Percent_Identity=26.2222222222222, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788225, Length=206, Percent_Identity=30.5825242718447, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787029, Length=218, Percent_Identity=27.5229357798165, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787089, Length=220, Percent_Identity=30.9090909090909, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790739, Length=210, Percent_Identity=30, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787712, Length=205, Percent_Identity=28.780487804878, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081709, Length=227, Percent_Identity=25.5506607929515, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1790525, Length=202, Percent_Identity=28.7128712871287, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786253, Length=199, Percent_Identity=32.6633165829146, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48995001, Length=202, Percent_Identity=29.2079207920792, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786563, Length=192, Percent_Identity=32.8125, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1789672, Length=230, Percent_Identity=26.5217391304348, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787164, Length=217, Percent_Identity=31.3364055299539, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786803, Length=212, Percent_Identity=27.3584905660377, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786872, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789891, Length=232, Percent_Identity=28.448275862069, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788897, Length=210, Percent_Identity=29.5238095238095, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787105, Length=227, Percent_Identity=27.3127753303965, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788472, Length=221, Percent_Identity=23.9819004524887, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788210, Length=201, Percent_Identity=30.8457711442786, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786345, Length=233, Percent_Identity=28.755364806867, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788506, Length=211, Percent_Identity=28.9099526066351, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=29.6650717703349, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787759, Length=243, Percent_Identity=27.5720164609054, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789864, Length=240, Percent_Identity=25.4166666666667, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790190, Length=206, Percent_Identity=25.2427184466019, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786703, Length=201, Percent_Identity=28.3582089552239, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787500, Length=211, Percent_Identity=27.0142180094787, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786698, Length=212, Percent_Identity=26.4150943396226, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786319, Length=194, Percent_Identity=27.8350515463918, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367384, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787143, Length=232, Percent_Identity=24.5689655172414, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787547, Length=203, Percent_Identity=22.1674876847291, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788450, Length=223, Percent_Identity=25.1121076233184, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788644, Length=237, Percent_Identity=24.8945147679325, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082268, Length=214, Percent_Identity=23.3644859813084, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1789593, Length=182, Percent_Identity=28.021978021978, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=229, Percent_Identity=26.2008733624454, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17558664, Length=229, Percent_Identity=25.764192139738, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=234, Percent_Identity=23.9316239316239, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=234, Percent_Identity=23.9316239316239, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=234, Percent_Identity=23.9316239316239, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=235, Percent_Identity=23.4042553191489, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=161, Percent_Identity=29.8136645962733, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=210, Percent_Identity=25.7142857142857, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=228, Percent_Identity=25.4385964912281, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=229, Percent_Identity=23.5807860262009, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=217, Percent_Identity=22.1198156682028, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573573, Length=176, Percent_Identity=28.9772727272727, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI28573571, Length=176, Percent_Identity=28.9772727272727, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24666092, Length=201, Percent_Identity=24.3781094527363, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24659289, Length=213, Percent_Identity=26.2910798122066, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI281363262, Length=225, Percent_Identity=26.2222222222222, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015856
- InterPro:   IPR003593
- InterPro:   IPR022112 [H]

Pfam domain/function: PF00005 ABC_tran; PF12370 CoABC_C [H]

EC number: NA

Molecular weight: Translated: 26081; Mature: 25950

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIAKRSAPATMLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKSTLLRVM
CCCCCCCCCCCEEEEHHHCCCCCCCCCHHEEECEEEEECCCEEEEECCCCCCHHHHHHHH
AGLLTPTAGTVMLQQQAMKNLKNRQRAAKVGVLFQEAENQLFHSTVADEIAFGLKLQKCP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCC
ADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAIACLEALSPPLLLLDEPSRDFDE
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
NWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVNPPDDIHP
HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEECCCCCCCCCCC
>Mature Secondary Structure 
AIAKRSAPATMLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKSTLLRVM
CCCCCCCCCCEEEEHHHCCCCCCCCCHHEEECEEEEECCCEEEEECCCCCCHHHHHHHH
AGLLTPTAGTVMLQQQAMKNLKNRQRAAKVGVLFQEAENQLFHSTVADEIAFGLKLQKCP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCC
ADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAIACLEALSPPLLLLDEPSRDFDE
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
NWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVNPPDDIHP
HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]